Browse Element(s) Details


OsAffx.24832.1.S1_at

Description tigr:9630.m05155
TID=OsAffx.24832.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=SRF-type transcription factor (DNA-binding and dimerisation domain), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5234011/11SHORT VEGETATIVE PHASE protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52280Os.25104.1.S1_x_at11/112+32002145..32011145expressed protein
LOC_Os02g52280Os.25104.2.S1_at10/112+32002145..32011145expressed protein
LOC_Os02g52290Os.12178.1.S1_at11/112+32011864..32013982Peptidylprolyl isomerase FKBP12, putative, expressed
LOC_Os02g52300Os.26718.1.S1_at11/112+32015703..32017260expressed protein
LOC_Os02g52314Os.51499.1.S1_at11/112+32017453..32021281ER6 protein, putative, expressed
LOC_Os02g52330OsAffx.3045.1.S1_at11/112+32023652..32027083hypothetical protein
LOC_Os02g52330Os.7307.3.S1_x_at3/112+32023652..32027083hypothetical protein
LOC_Os02g52340OsAffx.24832.1.S1_at11/112+32033056..32039261SHORT VEGETATIVE PHASE protein, putative, expressed
LOC_Os02g52340Os.4171.1.S1_s_at11/112+32033056..32039261SHORT VEGETATIVE PHASE protein, putative, expressed
LOC_Os02g52350OsAffx.12609.1.S1_at11/112+32040339..32041341hypothetical protein
LOC_Os02g52360Os.53007.1.S1_at11/112+32041897..32046431peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os02g52370Os.53665.1.S1_at11/112+32046713..32050017armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os02g52380OsAffx.24833.1.S1_at11/112+32053128..32054420hypothetical protein
LOC_Os02g52390OsAffx.24834.1.S1_x_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.15022.1.S1_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.27478.1.A1_s_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390OsAffx.24834.1.S1_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.39065.1.A1_s_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.27478.2.A1_s_at10/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.54818.1.S1_at1/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52400Os.7555.1.S1_at11/112+32063121..32064413expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009908biological_processflower development
GO:0009910biological_processnegative regulation of flower development
GO:0009911biological_processpositive regulation of flower development
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24832.1.S1_at--169--5071Chr02:32038963..32038987 (25 bp)
GCAGCGTTCTAAGTATGATCTTGCG
LOC_Os02g52340
OsAffx.24832.1.S1_at--1102--711Chr02:32038977..32039001 (25 bp)
ATGATCTTGCGCTATCTTGCATTCT
LOC_Os02g52340
OsAffx.24832.1.S1_at--805--9571Chr02:32038991..32039015 (25 bp)
TCTTGCATTCTTGCGTAATATATAT
LOC_Os02g52340
OsAffx.24832.1.S1_at--197--2071Chr02:32039016..32039040 (25 bp)
ACATTGTCGCTGTCGTTAGATTTCA
LOC_Os02g52340
OsAffx.24832.1.S1_at--669--6531Chr02:32039034..32039058 (25 bp)
GATTTCAGTTCTTAGCTAGCAGCCA
LOC_Os02g52340
OsAffx.24832.1.S1_at--1098--4851Chr02:32039048..32039072 (25 bp)
GCTAGCAGCCACTAGTTGGTGTTAA
LOC_Os02g52340
OsAffx.24832.1.S1_at--996--711Chr02:32039105..32039129 (25 bp)
ATGATTTACCTGTCACGCTATTTCG
LOC_Os02g52340
OsAffx.24832.1.S1_at--137--10211Chr02:32039123..32039147 (25 bp)
TATTTCGCGGGCTGCAATTTGTTGC
LOC_Os02g52340
OsAffx.24832.1.S1_at--211--3191Chr02:32039137..32039161 (25 bp)
CAATTTGTTGCTTGAGATATGCTCT
LOC_Os02g52340
OsAffx.24832.1.S1_at--864--8511Chr02:32039165..32039189 (25 bp)
TGGAAGAACACTATGCAGATGCGCT
LOC_Os02g52340
OsAffx.24832.1.S1_at--1036--9151Chr02:32039184..32039208 (25 bp)
TGCGCTCCAGCATTGATTTTCATTA
LOC_Os02g52340
Target Sequence 
GCAGCGTTCTAAGTATGATCTTGCGCTATCTTGCATTCTTGCGTAATATATATACATTGTCGCTGTCGTTAGATTTCAGT
TCTTAGCTAGCAGCCACTAGTTGGTGTTAATAGCTTTTCCTTTTCCTTTCCCTTTTCTTTTCATGATTTACCTGTCACGC
TATTTCGCGGGCTGCAATTTGTTGCTTGAGATATGCTCTGCATGGAAGAACACTATGCAGATGCGCTCCAGCATTGATTT
TCATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24832.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis