Browse Element(s) Details


Os.25104.2.S1_at

Description gb:AK101423.1
DB_XREF= gi:32986632
TID=Os.25104.2
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.25104 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033038D16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033038D16, full insert sequence.
FL= gb:AK101423.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5228010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52230Os.4961.1.S1_a_at11/112+31980259..31983551TRANSPORT INHIBITOR RESPONSE 1 protein, putative, expressed
LOC_Os02g52230Os.4961.3.S1_x_at11/112+31980259..31983551TRANSPORT INHIBITOR RESPONSE 1 protein, putative, expressed
LOC_Os02g52240OsAffx.12608.1.S1_at11/112+31987873..31988925hypothetical protein
LOC_Os02g52250Os.19400.1.S1_at11/112+31989349..31991827SKIP/SNW domain containing protein, expressed
LOC_Os02g52260Os.9818.1.S1_at11/112+31993358..31995386expressed protein
LOC_Os02g52270OsAffx.24831.1.S1_s_at11/112+31995777..31997987Chaperone protein dnaJ, putative, expressed
LOC_Os02g52280Os.25104.1.S1_x_at11/112+32002145..32011145expressed protein
LOC_Os02g52280Os.25104.2.S1_at10/112+32002145..32011145expressed protein
LOC_Os02g52290Os.12178.1.S1_at11/112+32011864..32013982Peptidylprolyl isomerase FKBP12, putative, expressed
LOC_Os02g52300Os.26718.1.S1_at11/112+32015703..32017260expressed protein
LOC_Os02g52314Os.51499.1.S1_at11/112+32017453..32021281ER6 protein, putative, expressed
LOC_Os02g52330OsAffx.3045.1.S1_at11/112+32023652..32027083hypothetical protein
LOC_Os02g52330Os.7307.3.S1_x_at3/112+32023652..32027083hypothetical protein
LOC_Os02g52340OsAffx.24832.1.S1_at11/112+32033056..32039261SHORT VEGETATIVE PHASE protein, putative, expressed
LOC_Os02g52340Os.4171.1.S1_s_at11/112+32033056..32039261SHORT VEGETATIVE PHASE protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25104.2.S1_at--787--6571Chr02:32011104..32011128 (25 bp)
GATTCTGGCGAAGTTCATGGAGTAT
LOC_Os02g52280
Os.25104.2.S1_at--694--10611Chr02:32011106..32011130 (25 bp)
TTCTGGCGAAGTTCATGGAGTATGT
LOC_Os02g52280
Os.25104.2.S1_at--921--3911Chr02:32011108..32011132 (25 bp)
CTGGCGAAGTTCATGGAGTATGTTT
LOC_Os02g52280
Os.25104.2.S1_at--1068--8371Chr02:32011110..32011134 (25 bp)
GGCGAAGTTCATGGAGTATGTTTTC
LOC_Os02g52280
Os.25104.2.S1_at--1046--2811Chr02:32011114..32011138 (25 bp)
AAGTTCATGGAGTATGTTTTCGGGC
LOC_Os02g52280
Os.25104.2.S1_at--217--1231Chr02:32011115..32011139 (25 bp)
AGTTCATGGAGTATGTTTTCGGGCT
LOC_Os02g52280
Os.25104.2.S1_at--996--10531Chr02:32011117..32011141 (25 bp)
TTCATGGAGTATGTTTTCGGGCTGA
LOC_Os02g52280
Os.25104.2.S1_at--68--3511Chr02:32011119..32011143 (25 bp)
CATGGAGTATGTTTTCGGGCTGATT
LOC_Os02g52280
Os.25104.2.S1_at--965--831Chr02:32011120..32011144 (25 bp)
ATGGAGTATGTTTTCGGGCTGATTC
LOC_Os02g52280
Os.25104.2.S1_at--173--8551Chr02:32011121..32011145 (25 bp)
TGGAGTATGTTTTCGGGCTGATTCC
LOC_Os02g52280
Os.25104.2.S1_at--833--8011Chr02:32011122..32011146 (25 bp)
GGAGTATGTTTTCGGGCTGATTCCA
NONE
Target Sequence 
GATTCTGGCGAAGTTCATGGAGTATGTTTTCGGGCTGATTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25104.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis