Browse Element(s) Details


OsAffx.12608.1.S1_at

Description tigr:9630.m05144
TID=OsAffx.12608.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5224011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52210Os.11365.1.S1_at11/112+31961936..31964156Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g52220Os.53392.1.S1_at11/112+31969773..31973267pentatricopeptide, putative, expressed
LOC_Os02g52230Os.4961.1.S1_a_at11/112+31980259..31983551TRANSPORT INHIBITOR RESPONSE 1 protein, putative, expressed
LOC_Os02g52230Os.4961.3.S1_x_at11/112+31980259..31983551TRANSPORT INHIBITOR RESPONSE 1 protein, putative, expressed
LOC_Os02g52240OsAffx.12608.1.S1_at11/112+31987873..31988925hypothetical protein
LOC_Os02g52250Os.19400.1.S1_at11/112+31989349..31991827SKIP/SNW domain containing protein, expressed
LOC_Os02g52260Os.9818.1.S1_at11/112+31993358..31995386expressed protein
LOC_Os02g52270OsAffx.24831.1.S1_s_at11/112+31995777..31997987Chaperone protein dnaJ, putative, expressed
LOC_Os02g52280Os.25104.1.S1_x_at11/112+32002145..32011145expressed protein
LOC_Os02g52280Os.25104.2.S1_at10/112+32002145..32011145expressed protein
LOC_Os02g52290Os.12178.1.S1_at11/112+32011864..32013982Peptidylprolyl isomerase FKBP12, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12608.1.S1_at--804--2731Chr02:31988705..31988728 (24 bp)
AAGACCGAGGTTCTCTTTGTCACTG
LOC_Os02g52240
OsAffx.12608.1.S1_at--353--6151Chr02:31988710..31988734 (25 bp)
GAGGTTCTCTTTGTCACTGGGAAGA
LOC_Os02g52240
OsAffx.12608.1.S1_at--470--10251Chr02:31988719..31988743 (25 bp)
TTTGTCACTGGGAAGAGTAGCATCA
LOC_Os02g52240
OsAffx.12608.1.S1_at--1102--6951Chr02:31988735..31988759 (25 bp)
GTAGCATCAGGATCTTGGGCTCAGA
LOC_Os02g52240
OsAffx.12608.1.S1_at--149--7371Chr02:31988777..31988801 (25 bp)
GTGAGGTGCTTTTTGTAGCCGAACA
LOC_Os02g52240
OsAffx.12608.1.S1_at--370--7291Chr02:31988805..31988829 (25 bp)
GTGCCGATGGAACCTCAAGGTTGCT
LOC_Os02g52240
OsAffx.12608.1.S1_at--86--5431Chr02:31988814..31988838 (25 bp)
GAACCTCAAGGTTGCTCGGCTGCTT
LOC_Os02g52240
OsAffx.12608.1.S1_at--707--8331Chr02:31988831..31988855 (25 bp)
GGCTGCTTCGTTTGGGCCTAGGCAT
LOC_Os02g52240
OsAffx.12608.1.S1_at--308--931Chr02:31988850..31988874 (25 bp)
AGGCATTAAGCAGGCCGGAGTTATC
LOC_Os02g52240
OsAffx.12608.1.S1_at--727--4471Chr02:31988863..31988887 (25 bp)
GCCGGAGTTATCAGCCAGCGTAATT
LOC_Os02g52240
OsAffx.12608.1.S1_at--524--10171Chr02:31988871..31988895 (25 bp)
TATCAGCCAGCGTAATTTGCTCAGC
LOC_Os02g52240
Target Sequence 
AAGACCGAGGTTCTCTTTGTCACTGGGAAGAGTAGCATCAGGATCTTGGGCTCAGATATGAGCAAGGAAGAAAGTGAGGT
GCTTTTTGTAGCCGAACAGGGGTGCCGATGGAACCTCAAGGTTGCTCGGCTGCTTCGTTTGGGCCTAGGCATTAAGCAGG
CCGGAGTTATCAGCCAGCGTAATTTGCTCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12608.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis