Browse Element(s) Details


Os.11365.1.S1_at

Description gb:AY579411.1
DB_XREF= gi:46392556
TID=Os.11365.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11365 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) RINGC3HC4PHD zinc finger-like protein mRNA, complete cds.
PROD=RINGC3HC4PHD zinc finger-like protein
FL= gb:AK067456.1 gb:AY579411.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5221011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52180Os.53242.1.S1_at11/112+31946062..31947229Plastocyanin-like domain containing protein, expressed
LOC_Os02g52190OsAffx.3043.1.S1_s_at11/112+31953359..31955096Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g52200OsAffx.3044.1.S1_at11/112+31956526..31957301hypothetical protein
LOC_Os02g52210Os.11365.1.S1_at11/112+31961936..31964156Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g52220Os.53392.1.S1_at11/112+31969773..31973267pentatricopeptide, putative, expressed
LOC_Os02g52230Os.4961.1.S1_a_at11/112+31980259..31983551TRANSPORT INHIBITOR RESPONSE 1 protein, putative, expressed
LOC_Os02g52230Os.4961.3.S1_x_at11/112+31980259..31983551TRANSPORT INHIBITOR RESPONSE 1 protein, putative, expressed
LOC_Os02g52240OsAffx.12608.1.S1_at11/112+31987873..31988925hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0010200biological_processresponse to chitin
GO:0050832biological_processdefense response to fungi
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11365.1.S1_at--63--5051Chr02:31963023..31963047 (25 bp)
GCAGATGGTCATCTTTTCTCTCAAA
LOC_Os02g52210
Os.11365.1.S1_at--174--5971Chr02:31963090..31963114 (25 bp)
GAGAACGCCGGATAGCACCCAGGTG
LOC_Os02g52210
Os.11365.1.S1_at--659--1811Chr02:31963106..31963130 (25 bp)
ACCCAGGTGGAAGTGTCATCATCCT
LOC_Os02g52210
Os.11365.1.S1_at--124--5791Chr02:31963187..31963211 (25 bp)
GACGACGGTTCTGCTCATGGGACTG
LOC_Os02g52210
Os.11365.1.S1_at--222--791Chr02:31963203..31963227 (25 bp)
ATGGGACTGCACAGTACCCTGGTTG
LOC_Os02g52210
Os.11365.1.S1_at--33--1191Chr02:31963215..31963239 (25 bp)
AGTACCCTGGTTGCACTGTGGCCAG
LOC_Os02g52210
Os.11365.1.S1_at--341--2931Chr02:31963271..31963295 (25 bp)
AAGGCAGCTACCAGGCAAGTTCGAA
LOC_Os02g52210
Os.11365.1.S1_at--723--5471Chr02:31963340..31963364 (25 bp)
GAACTTGACGTCATGCATTTTCCCA
LOC_Os02g52210
Os.11365.1.S1_at--1057--7171Chr02:31963392..31963416 (25 bp)
GTCGGTGGGACTGTATTCTGTACTC
LOC_Os02g52210
Os.11365.1.S1_at--839--371Chr02:31963432..31963456 (25 bp)
ATCAACGCCGATATGCCCAAATATT
LOC_Os02g52210
Os.11365.1.S1_at--280--811Chr02:31963457..31963481 (25 bp)
ATGGGAGCACCTATTGATCAATCAG
LOC_Os02g52210
Target Sequence 
GCAGATGGTCATCTTTTCTCTCAAATTCTTTGTCAGGAAAGCTGTCTTTCCTCTCCCCGTCGTCGAGGAGAACGCCGGAT
AGCACCCAGGTGGAAGTGTCATCATCCTCGTCGTCGTCGGTGACGAAGGTGAAAGGGAAGCGCGTGGCCGCCGTCGATGT
TGCCGACGACGGTTCTGCTCATGGGACTGCACAGTACCCTGGTTGCACTGTGGCCAGCTCGGCGGCGGCGGCGGCTGTGG
ACGTGGAGAAGGCAGCTACCAGGCAAGTTCGAACATAGAAAACGAACAGAAGTTTTGAGTGAGAAACTTGAACAGTTGAA
CTTGACGTCATGCATTTTCCCACATGAAAGAAAGAAATGGTCTTTTTTTGTCGGTGGGACTGTATTCTGTACTCTGTACT
AGGTATATTATCAACGCCGATATGCCCAAATATTATGGGAGCACCTATTGATCAATCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11365.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis