Browse Element(s) Details


OsAffx.3044.1.S1_at

Description tigr:9630.m05140
TID=OsAffx.3044.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5220011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52180Os.53242.1.S1_at11/112+31946062..31947229Plastocyanin-like domain containing protein, expressed
LOC_Os02g52190OsAffx.3043.1.S1_s_at11/112+31953359..31955096Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g52200OsAffx.3044.1.S1_at11/112+31956526..31957301hypothetical protein
LOC_Os02g52210Os.11365.1.S1_at11/112+31961936..31964156Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g52220Os.53392.1.S1_at11/112+31969773..31973267pentatricopeptide, putative, expressed
LOC_Os02g52230Os.4961.1.S1_a_at11/112+31980259..31983551TRANSPORT INHIBITOR RESPONSE 1 protein, putative, expressed
LOC_Os02g52230Os.4961.3.S1_x_at11/112+31980259..31983551TRANSPORT INHIBITOR RESPONSE 1 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3044.1.S1_at--398--851Chr02:31956579..31956603 (25 bp)
ATGGCACTGTTGGTTGGTAGCCGCT
LOC_Os02g52200
OsAffx.3044.1.S1_at--183--7292Chr02:31956613..31956637 (25 bp)
GTGCCGGTGCTAGCTCTTTCAGAAA
LOC_Os02g52200
OsAffx.3044.1.S1_at--333--3911Chr02:31956617..31956641 (25 bp)
CGGTGCTAGCTCTTTCAGAAACCTG
LOC_Os02g52200
OsAffx.3044.1.S1_at--709--5411Chr02:31957133..31957157 (25 bp)
GAAACTTGAAAGTCCTGAACGATTG
LOC_Os02g52200
OsAffx.3044.1.S1_at--292--2851Chr02:31957142..31957166 (25 bp)
AAGTCCTGAACGATTGGCGAACAAG
LOC_Os02g52200
OsAffx.3044.1.S1_at--318--7991Chr02:31957166..31957190 (25 bp)
GGATGGAAATGGAAGCCTAACGTAT
LOC_Os02g52200
OsAffx.3044.1.S1_at--18--2671Chr02:31957178..31957202 (25 bp)
AAGCCTAACGTATGAGGCGGTGGCA
LOC_Os02g52200
OsAffx.3044.1.S1_at--875--4671Chr02:31957194..31957218 (25 bp)
GCGGTGGCAGTGACATGCACTGAAA
LOC_Os02g52200
OsAffx.3044.1.S1_at--663--2911Chr02:31957217..31957241 (25 bp)
AATGGAGCGGAAACGAAATGTTCAA
LOC_Os02g52200
OsAffx.3044.1.S1_at--1056--731Chr02:31957234..31957258 (25 bp)
ATGTTCAAAGTTCTGTCTCCATCTC
LOC_Os02g52200
OsAffx.3044.1.S1_at--556--8711Chr02:31957247..31957271 (25 bp)
TGTCTCCATCTCTCCAATAGGACCA
LOC_Os02g52200
Target Sequence 
ATGGCACTGTTGGTTGGTAGCCGCTGGTGGGCTGGTGCCGGTGCTAGCTCTTTCAGAAACCTGCAGAGTGATGCAGGAAC
GGAAGGGAGGAAAGAAACTTGAAAGTCCTGAACGATTGGCGAACAAGGATGGAAATGGAAGCCTAACGTATGAGGCGGTG
GCAGTGACATGCACTGAAATGGAGCGGAAACGAAATGTTCAAAGTTCTGTCTCCATCTCTCCAATAGGACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3044.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis