Browse Element(s) Details


Os.53392.1.S1_at

Description gb:AK072404.1
DB_XREF= gi:32982427
TID=Os.53392.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53392 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-174-A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023077D13, full insert sequence.
FL= gb:AK072404.1 gb:AK110954.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5222011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52180Os.53242.1.S1_at11/112+31946062..31947229Plastocyanin-like domain containing protein, expressed
LOC_Os02g52190OsAffx.3043.1.S1_s_at11/112+31953359..31955096Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g52200OsAffx.3044.1.S1_at11/112+31956526..31957301hypothetical protein
LOC_Os02g52210Os.11365.1.S1_at11/112+31961936..31964156Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g52220Os.53392.1.S1_at11/112+31969773..31973267pentatricopeptide, putative, expressed
LOC_Os02g52230Os.4961.1.S1_a_at11/112+31980259..31983551TRANSPORT INHIBITOR RESPONSE 1 protein, putative, expressed
LOC_Os02g52230Os.4961.3.S1_x_at11/112+31980259..31983551TRANSPORT INHIBITOR RESPONSE 1 protein, putative, expressed
LOC_Os02g52240OsAffx.12608.1.S1_at11/112+31987873..31988925hypothetical protein
LOC_Os02g52250Os.19400.1.S1_at11/112+31989349..31991827SKIP/SNW domain containing protein, expressed
LOC_Os02g52260Os.9818.1.S1_at11/112+31993358..31995386expressed protein
LOC_Os02g52270OsAffx.24831.1.S1_s_at11/112+31995777..31997987Chaperone protein dnaJ, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53392.1.S1_at--776--6471Chr02:31971441..31971465 (25 bp)
GATACATCGGTTGTCAGAGCATATG
LOC_Os02g52220
Os.53392.1.S1_at--422--751Chr02:31971487..31971511 (25 bp)
ATGTCTAGGCGTTTTGCAATCACAC
LOC_Os02g52220
Os.53392.1.S1_at--301--5051Chr02:31971620..31971644 (25 bp)
GCAGCAATTGGTTGTCACTTGCAAA
LOC_Os02g52220
Os.53392.1.S1_at--524--231Chr02:31971654..31971678 (25 bp)
ATATTTCCTGGGTCCTATATAGGTT
LOC_Os02g52220
Os.53392.1.S1_at--832--9071Chr02:31971726..31971750 (25 bp)
TGCTTTGACTGCTGGTTGCATACTT
LOC_Os02g52220
Os.53392.1.S1_at--1051--3291Chr02:31971781..31971805 (25 bp)
CACAACATCACTCTTATGTACCTTC
LOC_Os02g52220
Os.53392.1.S1_at--63--8591Chr02:31971836..31971860 (25 bp)
TGGTAGCTCCAACACTTTGCAGTGT
LOC_Os02g52220
Os.53392.1.S1_at--1005--431Chr02:31971935..31971959 (25 bp)
ATCTTACCTGCATTTCCTGGTAGCA
LOC_Os02g52220
Os.53392.1.S1_at--60--9992Chr02:31971955..31971979 (25 bp)
TAGCATTTGTTTGGCAAGTGGCAAC
LOC_Os02g52220
Os.53392.1.S1_at--496--5151Chr02:31971975..31971999 (25 bp)
GCAACCCTCACATGTAGACCTTATG
LOC_Os02g52220
Os.53392.1.S1_at--538--8191Chr02:31972017..31972041 (25 bp)
GGAAGGATATGATCCCAGTTTCACC
LOC_Os02g52220
Target Sequence 
GATACATCGGTTGTCAGAGCATATGAGGAGATTTTACAATGTTGCAATGTCTAGGCGTTTTGCAATCACACAGAAGAAGA
AGAGCATAGGTCTGAGAAGGAAATGAATATTTCGAGATTTCTTGTTAGTGCAGATGATCAGGAGTTTATATGAGGTTAGC
TAATTATTGGTTTATTATTGCAGCAATTGGTTGTCACTTGCAAATGTATTAAAATATTTCCTGGGTCCTATATAGGTTCA
GTGTTATTTTACCAATTTGTCTAGGAGTAAGTTGCATCTGTGAAATGCTTTGACTGCTGGTTGCATACTTGAATAGAAAC
TTGCATGTAGCTAATAGCAACACAACATCACTCTTATGTACCTTCAACATAGAAAAGCACAATTAGTTACATTTTTGGTA
GCTCCAACACTTTGCAGTGTGTTTGTTTCGTGCAATCAGCATAATAATGGCTAAATTGGCGAAGCAAACAAAAATATTTC
AATCAATTGTTCTTATCTTACCTGCATTTCCTGGTAGCATTTGTTTGGCAAGTGGCAACCCTCACATGTAGACCTTATGA
TTTCCTTAGTTCTGCAGGAAGGATATGATCCCAGTTTCACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53392.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis