Browse Element(s) Details


Os.19400.1.S1_at

Description gb:AK067153.1
DB_XREF= gi:32977171
TID=Os.19400.1
CNT=42
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.19400 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023106G20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013098N03, full insert sequence.
FL= gb:AK071666.1 gb:AK067153.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5225011/11SKIP/SNW domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52220Os.53392.1.S1_at11/112+31969773..31973267pentatricopeptide, putative, expressed
LOC_Os02g52230Os.4961.1.S1_a_at11/112+31980259..31983551TRANSPORT INHIBITOR RESPONSE 1 protein, putative, expressed
LOC_Os02g52230Os.4961.3.S1_x_at11/112+31980259..31983551TRANSPORT INHIBITOR RESPONSE 1 protein, putative, expressed
LOC_Os02g52240OsAffx.12608.1.S1_at11/112+31987873..31988925hypothetical protein
LOC_Os02g52250Os.19400.1.S1_at11/112+31989349..31991827SKIP/SNW domain containing protein, expressed
LOC_Os02g52260Os.9818.1.S1_at11/112+31993358..31995386expressed protein
LOC_Os02g52270OsAffx.24831.1.S1_s_at11/112+31995777..31997987Chaperone protein dnaJ, putative, expressed
LOC_Os02g52280Os.25104.1.S1_x_at11/112+32002145..32011145expressed protein
LOC_Os02g52280Os.25104.2.S1_at10/112+32002145..32011145expressed protein
LOC_Os02g52290Os.12178.1.S1_at11/112+32011864..32013982Peptidylprolyl isomerase FKBP12, putative, expressed
LOC_Os02g52300Os.26718.1.S1_at11/112+32015703..32017260expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19400.1.S1_at--695--9311Chr02:31990018..31990042 (25 bp)
TCCCTTCGGTCTTGATCAGTTCTTG
LOC_Os02g52250
Os.19400.1.S1_at--1049--8011Chr02:31989884..31989908 (25 bp)
GGAGGTCCCGCATTAACTTTGAAAG
LOC_Os02g52250
Os.19400.1.S1_at--739--1451Chr02:31989824..31989848 (25 bp)
AGAAGTTTCTCCATGCATTCCAAAT
LOC_Os02g52250
Os.19400.1.S1_at--388--8131Chr02:31989753..31989777 (25 bp)
GGACTTGATGTCTGAGTTGTCTTAA
LOC_Os02g52250
Os.19400.1.S1_at--942--10471Chr02:31989732..31989756 (25 bp)
TTAATGCAACGTCTACTTCCAAGGG
LOC_Os02g52250
Os.19400.1.S1_at--992--6111Chr02:31989697..31989721 (25 bp)
GAGTGTACCTGTTTAGATCCTGTGA
LOC_Os02g52250
Os.19400.1.S1_at--832--6371Chr02:31989682..31989706 (25 bp)
GATCCTGTGATTATGCTTGTTGTTT
LOC_Os02g52250
Os.19400.1.S1_at--159--2531Chr02:31989629..31989653 (25 bp)
AACTTATCATCATTCCATATCCCTT
LOC_Os02g52250
Os.19400.1.S1_at--410--671Chr02:31989587..31989611 (25 bp)
ATGAAGTCTCGATGTGTCTGGCTGA
LOC_Os02g52250
Os.19400.1.S1_at--622--3911Chr02:31989570..31989594 (25 bp)
CTGGCTGACCTTACATTTTCTGGTA
LOC_Os02g52250
Os.19400.1.S1_at--472--1311Chr02:31989529..31989553 (25 bp)
AGATGTATCTGCCTATCTGGCTGAA
LOC_Os02g52250
Target Sequence 
TCCCTTCGGTCTTGATCAGTTCTTGACTGAAGTGAAGAAGGGGAAGAAAGCTGTTGAGAAGATTGGAAGCGGAGGAGCCA
TGAGGGCAAGTGGTGGATCCTCAATGAGAGATGATTACGAGGGTGGAGGATCTGGGAGGTCCCGCATTAACTTTGAAAGA
GGTCGTTGAGGTATTAGATCTGCATGTTTTGTTCAGAAGTTTCTCCATGCATTCCAAATGTTATCTGGAGGGTATTCTGT
TGAGAATATCAACTTCTTGATGAGAGGACTTGATGTCTGAGTTGTCTTAATGCAACGTCTACTTCCAAGGGGCATCTTAA
GGAGTGTACCTGTTTAGATCCTGTGATTATGCTTGTTGTTTATCTATTTGTGGATGGATCTGTAAGCTTAACTTATCATC
ATTCCATATCCCTTATATTTTGTGGTGCTTTATGAAGTCTCGATGTGTCTGGCTGACCTTACATTTTCTGGTACTGTACC
AAGTCTTTAAGATGTATCTGCCTATCTGGCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19400.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis