Browse Element(s) Details


Os.9818.1.S1_at

Description gb:AK059854.1
DB_XREF= gi:32969872
TID=Os.9818.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9818 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-206-H06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-206-H06, full insert sequence.
FL= gb:AK059854.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5226011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52220Os.53392.1.S1_at11/112+31969773..31973267pentatricopeptide, putative, expressed
LOC_Os02g52230Os.4961.1.S1_a_at11/112+31980259..31983551TRANSPORT INHIBITOR RESPONSE 1 protein, putative, expressed
LOC_Os02g52230Os.4961.3.S1_x_at11/112+31980259..31983551TRANSPORT INHIBITOR RESPONSE 1 protein, putative, expressed
LOC_Os02g52240OsAffx.12608.1.S1_at11/112+31987873..31988925hypothetical protein
LOC_Os02g52250Os.19400.1.S1_at11/112+31989349..31991827SKIP/SNW domain containing protein, expressed
LOC_Os02g52260Os.9818.1.S1_at11/112+31993358..31995386expressed protein
LOC_Os02g52270OsAffx.24831.1.S1_s_at11/112+31995777..31997987Chaperone protein dnaJ, putative, expressed
LOC_Os02g52280Os.25104.1.S1_x_at11/112+32002145..32011145expressed protein
LOC_Os02g52280Os.25104.2.S1_at10/112+32002145..32011145expressed protein
LOC_Os02g52290Os.12178.1.S1_at11/112+32011864..32013982Peptidylprolyl isomerase FKBP12, putative, expressed
LOC_Os02g52300Os.26718.1.S1_at11/112+32015703..32017260expressed protein
LOC_Os02g52314Os.51499.1.S1_at11/112+32017453..32021281ER6 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009773biological_processphotosynthetic electron transport in photosystem I
GO:0009941cellular_componentchloroplast envelope
GO:0030093cellular_componentphotosystem I (sensu Viridiplantae)
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9818.1.S1_at--73--6571Chr02:31994575..31994869 (25 bp)
GATTCCATTCCCTTGGTTCCAAAAG
LOC_Os02g52260
Os.9818.1.S1_at--897--3171Chr02:31994897..31994921 (25 bp)
CAATTTGGTTCACTTCACGGTACCT
LOC_Os02g52260
Os.9818.1.S1_at--479--10771Chr02:31995064..31995088 (25 bp)
TTGAGCTCACGATGAATGATCCTAT
LOC_Os02g52260
Os.9818.1.S1_at--792--8291Chr02:31995100..31995124 (25 bp)
GGCTTCGCAGCCAACTTATTATTAG
LOC_Os02g52260
Os.9818.1.S1_at--77--10091Chr02:31995122..31995146 (25 bp)
TAGGTCTTCTTTTTTCTATTACTGA
LOC_Os02g52260
Os.9818.1.S1_at--124--4371Chr02:31995172..31995196 (25 bp)
CCACGTTTCTTTCGCTTCAAATATG
LOC_Os02g52260
Os.9818.1.S1_at--202--5931Chr02:31995231..31995255 (25 bp)
GAGCTTGCTCAAGTCTTTCTGGTTT
LOC_Os02g52260
Os.9818.1.S1_at--63--10371Chr02:31995254..31995278 (25 bp)
TTTTTTACCACTTGATCCGATGTAT
LOC_Os02g52260
Os.9818.1.S1_at--39--2331Chr02:31995292..31995316 (25 bp)
AAAGTGCCGCCAACTGTGAAGCTGT
LOC_Os02g52260
Os.9818.1.S1_at--1044--7351Chr02:31995307..31995331 (25 bp)
GTGAAGCTGTGTACCTTGGATACAT
LOC_Os02g52260
Os.9818.1.S1_at--840--2291Chr02:31995343..31995367 (25 bp)
AAATGGGTCGACCTTCATATTTGGT
LOC_Os02g52260
Target Sequence 
GATTCCATTCCCTTGGTTCCAAAAGTTNCTTGAACTCATAGGAACTGGTTACTCAATTTGGTTCACTTCACGGTACCTCC
TCTTCAAGGAAAGCAGGGACAAACTGTTTGCGAAATTCGAAGATCTGAAAGAGAGGATTATTTGAGCTCACGATGAATGA
TCCTATGGTGTATGTTAGGCTTCGCAGCCAACTTATTATTAGGTCTTCTTTTTTCTATTACTGAAAGGGAAAAAAGTTGT
GTATGTAAGCCACGTTTCTTTCGCTTCAAATATGATCAGACATCCATAGATTTTTGTTTGTTAGAGCGGAGCTTGCTCAA
GTCTTTCTGGTTTTTTTACCACTTGATCCGATGTATATACTCCATACTGAAAGTGCCGCCAACTGTGAAGCTGTGTACCT
TGGATACATAATAATATATCAAATGGGTCGACCTTCATATTTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9818.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis