Browse Element(s) Details


OsAffx.24831.1.S1_s_at

Description tigr:9630.m05147
TID=OsAffx.24831.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5227011/11Chaperone protein dnaJ, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52220Os.53392.1.S1_at11/112+31969773..31973267pentatricopeptide, putative, expressed
LOC_Os02g52230Os.4961.1.S1_a_at11/112+31980259..31983551TRANSPORT INHIBITOR RESPONSE 1 protein, putative, expressed
LOC_Os02g52230Os.4961.3.S1_x_at11/112+31980259..31983551TRANSPORT INHIBITOR RESPONSE 1 protein, putative, expressed
LOC_Os02g52240OsAffx.12608.1.S1_at11/112+31987873..31988925hypothetical protein
LOC_Os02g52250Os.19400.1.S1_at11/112+31989349..31991827SKIP/SNW domain containing protein, expressed
LOC_Os02g52260Os.9818.1.S1_at11/112+31993358..31995386expressed protein
LOC_Os02g52270OsAffx.24831.1.S1_s_at11/112+31995777..31997987Chaperone protein dnaJ, putative, expressed
LOC_Os02g52280Os.25104.1.S1_x_at11/112+32002145..32011145expressed protein
LOC_Os02g52280Os.25104.2.S1_at10/112+32002145..32011145expressed protein
LOC_Os02g52290Os.12178.1.S1_at11/112+32011864..32013982Peptidylprolyl isomerase FKBP12, putative, expressed
LOC_Os02g52300Os.26718.1.S1_at11/112+32015703..32017260expressed protein
LOC_Os02g52314Os.51499.1.S1_at11/112+32017453..32021281ER6 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24831.1.S1_s_at--216--5511Chr02:31997167..31997191 (25 bp)
GAAAATGCAACCTCCAGATTTCAGG
LOC_Os02g52270
OsAffx.24831.1.S1_s_at--247--1711Chr02:31996307..31996327 (21 bp)
ACCAAGTGCTCAGTAATCCAGCCAA
LOC_Os02g52270
OsAffx.24831.1.S1_s_at--847--6931Chr02:31996134..31996257 (25 bp)
GTAGTGGACTATCTGAACCGGCACA
LOC_Os02g52270
OsAffx.24831.1.S1_s_at--444--2311Chr02:31996110..31996134 (25 bp)
AAAGGTTTAATCCTTACTTGCAATG
LOC_Os02g52270
OsAffx.24831.1.S1_s_at--977--2931Chr02:31996075..31996099 (25 bp)
AAGGCATTCAGTATGGTGATCTTAC
LOC_Os02g52270
OsAffx.24831.1.S1_s_at--497--3831Chr02:31996024..31996048 (25 bp)
CTGCTGTCTTTGGATGGTGTGTGTC
LOC_Os02g52270
OsAffx.24831.1.S1_s_at--976--7731Chr02:31996009..31996033 (25 bp)
GGTGTGTGTCATTGTAAAATCTCAT
LOC_Os02g52270
OsAffx.24831.1.S1_s_at--253--7051Chr02:31995996..31996020 (25 bp)
GTAAAATCTCATGTAATCTGCAAAA
LOC_Os02g52270
OsAffx.24831.1.S1_s_at--732--9131Chr02:31995958..31995982 (25 bp)
TGCGGACCTGCCACTTTTGGGAGGA
LOC_Os02g52270
OsAffx.24831.1.S1_s_at--390--691Chr02:31995929..31995953 (25 bp)
ATGACGCTGAGTTCATCCTGGTATC
LOC_Os02g52270
OsAffx.24831.1.S1_s_at--249--6731Chr02:31995919..31995943 (25 bp)
GTTCATCCTGGTATCCTACAACATA
LOC_Os02g52270
Target Sequence 
GAAAATGCAACCTCCAGATTTCAGGAGATTAATGAAGCATACCAAGTGCTCAGTAATCCAGCCAAAAGGCGAGAGTATGA
CAAGAAAGGCATTCTTTATGTTCAAGATCATAATGTAGTGGACTATCTGAACCGGCACAAAGGTTTAATCCTTACTTGCA
ATGGCCTTGGCATAAGGCATTCAGTATGGTGATCTTACTCAGGGGTACTACAGTCTGCATCCATCTGCTGTCTTTGGATG
GTGTGTGTCATTGTAAAATCTCATGTAATCTGCAAAATGTAGCACGGTCATGCGGACCTGCCACTTTTGGGAGGAAATGA
TGACGCTGAGTTCATCCTGGTATCCTACAACATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24831.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis