Browse Element(s) Details


Os.51499.1.S1_at

Description gb:AK062958.1
DB_XREF= gi:32972976
TID=Os.51499.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51499 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-109-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-109-D03, full insert sequence.
FL= gb:AK062958.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5231411/11ER6 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52260Os.9818.1.S1_at11/112+31993358..31995386expressed protein
LOC_Os02g52270OsAffx.24831.1.S1_s_at11/112+31995777..31997987Chaperone protein dnaJ, putative, expressed
LOC_Os02g52280Os.25104.1.S1_x_at11/112+32002145..32011145expressed protein
LOC_Os02g52280Os.25104.2.S1_at10/112+32002145..32011145expressed protein
LOC_Os02g52290Os.12178.1.S1_at11/112+32011864..32013982Peptidylprolyl isomerase FKBP12, putative, expressed
LOC_Os02g52300Os.26718.1.S1_at11/112+32015703..32017260expressed protein
LOC_Os02g52314Os.51499.1.S1_at11/112+32017453..32021281ER6 protein, putative, expressed
LOC_Os02g52330OsAffx.3045.1.S1_at11/112+32023652..32027083hypothetical protein
LOC_Os02g52330Os.7307.3.S1_x_at3/112+32023652..32027083hypothetical protein
LOC_Os02g52340OsAffx.24832.1.S1_at11/112+32033056..32039261SHORT VEGETATIVE PHASE protein, putative, expressed
LOC_Os02g52340Os.4171.1.S1_s_at11/112+32033056..32039261SHORT VEGETATIVE PHASE protein, putative, expressed
LOC_Os02g52350OsAffx.12609.1.S1_at11/112+32040339..32041341hypothetical protein
LOC_Os02g52360Os.53007.1.S1_at11/112+32041897..32046431peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51499.1.S1_at--631--1831Chr02:32020703..32020727 (25 bp)
ACGCGCTCAAGATTTGCTCCGAGAA
LOC_Os02g52314
Os.51499.1.S1_at--763--8231Chr02:32020527..32020551 (25 bp)
GGCAAATCTCAAGGCCGATCTGCTC
LOC_Os02g52314
Os.51499.1.S1_at--118--3211Chr02:32017816..32017840 (25 bp)
CAATGTGGTCTGTCCAGTTGTTGTA
LOC_Os02g52314
Os.51499.1.S1_at--807--5111Chr02:32017784..32017808 (25 bp)
GCACTTGAGCCATCTTCGATCAGTA
LOC_Os02g52314
Os.51499.1.S1_at--1027--4751Chr02:32017753..32017777 (25 bp)
GCTGCACTTTAAGTCAAGCCTCTGA
LOC_Os02g52314
Os.51499.1.S1_at--113--2672Chr08:15375982..15376006 (25 bp)
AAGCCTCTGAGGTTGCTACTGCGCT
NONE
Os.51499.1.S1_at--638--9911Chr02:32017722..32017746 (25 bp)
TACTGCGCTATCATCCGTAATGGTA
LOC_Os02g52314
Os.51499.1.S1_at--41--7851Chr02:32017701..32017725 (25 bp)
GGTACTGCATATTTCACATTTGGAG
LOC_Os02g52314
Os.51499.1.S1_at--626--6491Chr02:32017630..32017654 (25 bp)
GATAGTTGTCGCGTGCATTTGAGCA
LOC_Os02g52314
Os.51499.1.S1_at--1104--2051Chr02:32017508..32017532 (25 bp)
ACTTGGCAGAAGTGAGTTCCCTTTT
LOC_Os02g52314
Os.51499.1.S1_at--519--6691Chr02:32017493..32017517 (25 bp)
GTTCCCTTTTGTATGAATCCTGTCA
LOC_Os02g52314
Target Sequence 
ACGCGCTCAAGATTTGCTCCGAGAAGAATGTGGAGGTGAAGACGGATGTGGTCGTTGGGGATCCTAAGGAGAAGATCTGC
GAGGTGACGGCAAATCTCAAGGCCGATCTGCTCGTCATGGGGTGCCGTGCTTTTGGCCCCCTCAAGAGAATGTTCTTAGG
AAGTGTGAGCAACTACTGCATCAACAATGTGGTCTGTCCAGTTGTTGTAATCAAAGGCACTTGAGCCATCTTCGATCAGT
ATTCTTTGCTGCACTTTAAGTCAAGCCTCTGAGGTTGCTACTGCGCTATCATCCGTAATGGTACTGCATATTTCACATTT
GGAGACTAGTTTGTTGTGCATCTTTTTGTCACATGGTGGTATTTACGGATGATAGTTGTCGCGTGCATTTGAGCAAGGNA
AATATGTATTGATTGTTCAATTGTAGAAATAAATGTGCCATGTAGCACATTGTTTTGTATATTCTTGTATTTGTTCTGTG
CTAAACATCACAAACTTGGCAGAAGTGAGTTCCCTTTTGTATGAATCCTGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51499.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis