Browse Element(s) Details


Os.4961.3.S1_x_at

Description gb:AK111630.1
DB_XREF= gi:37988293
TID=Os.4961.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4961 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023099L12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013121D06, full insert sequence.
FL= gb:AK111630.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5223011/11TRANSPORT INHIBITOR RESPONSE 1 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52200OsAffx.3044.1.S1_at11/112+31956526..31957301hypothetical protein
LOC_Os02g52210Os.11365.1.S1_at11/112+31961936..31964156Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g52220Os.53392.1.S1_at11/112+31969773..31973267pentatricopeptide, putative, expressed
LOC_Os02g52230Os.4961.1.S1_a_at11/112+31980259..31983551TRANSPORT INHIBITOR RESPONSE 1 protein, putative, expressed
LOC_Os02g52230Os.4961.3.S1_x_at11/112+31980259..31983551TRANSPORT INHIBITOR RESPONSE 1 protein, putative, expressed
LOC_Os02g52240OsAffx.12608.1.S1_at11/112+31987873..31988925hypothetical protein
LOC_Os02g52250Os.19400.1.S1_at11/112+31989349..31991827SKIP/SNW domain containing protein, expressed
LOC_Os02g52260Os.9818.1.S1_at11/112+31993358..31995386expressed protein
LOC_Os02g52270OsAffx.24831.1.S1_s_at11/112+31995777..31997987Chaperone protein dnaJ, putative, expressed
LOC_Os02g52280Os.25104.1.S1_x_at11/112+32002145..32011145expressed protein
LOC_Os02g52280Os.25104.2.S1_at10/112+32002145..32011145expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4961.3.S1_x_at--480--5471Chr02:31982500..31982524 (25 bp)
GAACTGCAAGAAGCTCACTAGACTT
LOC_Os02g52230
Os.4961.3.S1_x_at--264--1411Chr02:31982519..31982543 (25 bp)
AGACTTTCAGTCTCTGGTCTGCTCA
LOC_Os02g52230
Os.4961.3.S1_x_at--1148--8591Chr02:31982533..31982557 (25 bp)
TGGTCTGCTCACTGATAAGGCGTTT
LOC_Os02g52230
Os.4961.3.S1_x_at--48--2351Chr02:31982587..31982611 (25 bp)
AAAGACACTGTCTGTTGCCTTCGCT
LOC_Os02g52230
Os.4961.3.S1_x_at--793--2111Chr02:31982622..31982646 (25 bp)
ACATGTCTCTCCAATCTGTGTTTGA
LOC_Os02g52230
Os.4961.3.S1_x_at--315--6471Chr02:31982696..31982720 (25 bp)
GATAAGGGATTGCTCTCTGGCCTGA
LOC_Os02g52230
Os.4961.3.S1_x_at--85--9471Chr02:31982711..31982735 (25 bp)
TCTGGCCTGAGCTATTTTTACAACA
LOC_Os02g52230
Os.4961.3.S1_x_at--511--7991Chr02:31982748..31982772 (25 bp)
GGATGAATTCATGCAGGCTAACCAT
LOC_Os02g52230
Os.4961.3.S1_x_at--365--5131Chr02:31982797..31982821 (25 bp)
GCAAATGCCTGACTTGGTGGTTGAA
LOC_Os02g52230
Os.4961.3.S1_x_at--894--7011Chr02:31982875..31982899 (25 bp)
GTACTTGTATCGATCACTGGCAGGA
LOC_Os02g52230
Os.4961.3.S1_x_at--967--9031Chr02:31982911..31982935 (25 bp)
TGCACCTTCATTTGTCAACATCTTG
LOC_Os02g52230
Target Sequence 
GAACTGCAAGAAGCTCACTAGACTTTCAGTCTCTGGTCTGCTCACTGATAAGGCGTTTGCATACATTGGAAAATATGGGA
AACTAATAAAGACACTGTCTGTTGCCTTCGCTGGAAATAGTGACATGTCTCTCCAATCTGTGTTTGAAGGATGCACTAGG
TTGCAAAAGCTTGAGGTCAGAGATAGTCCTTTTAGTGATAAGGGATTGCTCTCTGGCCTGAGCTATTTTTACAACATGAG
GTTCTTATGGATGAATTCATGCAGGCTAACCATGAGGGGTTGTAGAGATGTAGCTCAGCAAATGCCTGACTTGGTGGTTG
AAGTGATGAAGGATCATCTTGATGATGAAGGGGAGATGGAGACTGTTGATAAACTGTACTTGTATCGATCACTGGCAGGA
GCAAGGAATGATGCACCTTCATTTGTCAACATCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4961.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis