Browse Element(s) Details


Os.53242.1.S1_at

Description gb:AK071537.1
DB_XREF= gi:32981560
TID=Os.53242.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53242 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023100A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023100A12, full insert sequence.
FL= gb:AK071537.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5218011/11Plastocyanin-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52160Os.20268.1.S1_at11/112+31917945..31925043LMBR1 integral membrane family protein, putative, expressed
LOC_Os02g52160Os.20268.1.S2_at11/112+31917945..31925043LMBR1 integral membrane family protein, putative, expressed
LOC_Os02g52170Os.57301.1.S1_at11/112+31926416..31927447expressed protein
LOC_Os02g52180Os.53242.1.S1_at11/112+31946062..31947229Plastocyanin-like domain containing protein, expressed
LOC_Os02g52190OsAffx.3043.1.S1_s_at11/112+31953359..31955096Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g52200OsAffx.3044.1.S1_at11/112+31956526..31957301hypothetical protein
LOC_Os02g52210Os.11365.1.S1_at11/112+31961936..31964156Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g52220Os.53392.1.S1_at11/112+31969773..31973267pentatricopeptide, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0031225cellular_componentanchored to membrane
GO:0005489molecular_functionelectron transporter activity
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53242.1.S1_at--1018--1771Chr02:31946279..31946303 (25 bp)
ACCGTCCCGTTCATGTCATACAATG
LOC_Os02g52180
Os.53242.1.S1_at--363--6751Chr02:31946271..31946295 (25 bp)
GTTCATGTCATACAATGGCGCCGGC
LOC_Os02g52180
Os.53242.1.S1_at--764--4571Chr02:31946231..31946255 (25 bp)
GCGCTGGCTACCATCGGAATGGTTT
LOC_Os02g52180
Os.53242.1.S1_at--319--9451Chr02:31946218..31946242 (25 bp)
TCGGAATGGTTTGCTTCGTCGTATT
LOC_Os02g52180
Os.53242.1.S1_at--283--3651Chr02:31946205..31946229 (25 bp)
CTTCGTCGTATTCGTGCAGCTTGGA
LOC_Os02g52180
Os.53242.1.S1_at--149--111Chr02:31946196..31946220 (25 bp)
ATTCGTGCAGCTTGGACTGTTGTAG
LOC_Os02g52180
Os.53242.1.S1_at--280--1951Chr02:31946181..31946205 (25 bp)
ACTGTTGTAGAGTAGTAGCCAGGAT
LOC_Os02g52180
Os.53242.1.S1_at--65--6211Chr02:31946155..31946179 (25 bp)
GAGGCAGTGCAAAGTGATCGTATAT
LOC_Os02g52180
Os.53242.1.S1_at--933--6271Chr02:31946120..31946144 (25 bp)
GATGTACGTACAAAGGTCGCGTCGT
LOC_Os02g52180
Os.53242.1.S1_at--547--9851Chr02:31946112..31946136 (25 bp)
TACAAAGGTCGCGTCGTGTACTGCA
LOC_Os02g52180
Os.53242.1.S1_at--132--4011Chr02:31946101..31946125 (25 bp)
CGTCGTGTACTGCAATGCTAAATGT
LOC_Os02g52180
Target Sequence 
ACCGTCCCGTTCATGTCATACAATGGCGCCGGCGGGCTCGGACCGGTGGCGCTGGCTACCATCGGAATGGTTTGCTTCGT
CGTATTCGTGCAGCTTGGACTGTTGTAGAGTAGTAGCCAGGATGGAGGCAGTGCAAAGTGATCGTATATGTAGTATTTAG
ATGTACGTACAAAGGTCGCGTCGTGTACTGCAATGCTAAATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53242.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis