Browse Element(s) Details


Os.20268.1.S1_at

Description gb:AK064259.1
DB_XREF= gi:32974277
TID=Os.20268.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20268 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013147A18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-105-D03, full insert sequence.
FL= gb:AK064259.1 gb:AK068256.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5216011/11LMBR1 integral membrane family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52120OsAffx.24830.1.S1_at11/112+31894315..31894800hypothetical protein
LOC_Os02g52130Os.5659.3.S1_x_at11/112+31902799..31905783F-box family protein, putative, expressed
LOC_Os02g52130Os.5659.1.S1_at10/112+31902799..31905783F-box family protein, putative, expressed
LOC_Os02g52140Os.16129.1.S1_at11/112+31910246..31914733Polyadenylate-binding protein 2, putative, expressed
LOC_Os02g52150Os.12257.1.S1_at11/112+31914985..31916538Hsp20/alpha crystallin family protein, expressed
LOC_Os02g52160Os.20268.1.S1_at11/112+31917945..31925043LMBR1 integral membrane family protein, putative, expressed
LOC_Os02g52160Os.20268.1.S2_at11/112+31917945..31925043LMBR1 integral membrane family protein, putative, expressed
LOC_Os02g52170Os.57301.1.S1_at11/112+31926416..31927447expressed protein
LOC_Os02g52180Os.53242.1.S1_at11/112+31946062..31947229Plastocyanin-like domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016021cellular_componentintegral to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20268.1.S1_at--874--5611Chr02:31922944..31922968 (25 bp)
GACAAACCAGTTCTGTCAGCTTGCT
LOC_Os02g52160
Os.20268.1.S1_at--643--8731Chr02:31922957..31922980 (24 bp)
TGTCAGCTTGCTTATGATCTGCTCA
LOC_Os02g52160
Os.20268.1.S1_at--275--6511Chr02:31923087..31923111 (25 bp)
GATATGCACCTCCTATTTCTTATAA
LOC_Os02g52160
Os.20268.1.S1_at--1052--9511Chr02:31923121..31923145 (25 bp)
TCTCATTCGACTTGGTGGTGATGCC
LOC_Os02g52160
Os.20268.1.S1_at--90--8171Chr02:31923315..31923339 (25 bp)
GGAAACATCGATGATGCCGTTCCTT
LOC_Os02g52160
Os.20268.1.S1_at--463--6331Chr02:31923327..31923351 (25 bp)
GATGCCGTTCCTTTCTTTGGAAGAG
LOC_Os02g52160
Os.20268.1.S1_at--935--1311Chr02:31923348..31923372 (25 bp)
AGAGGCTTCAACAGGATATATCCAT
LOC_Os02g52160
Os.20268.1.S1_at--1161--2431Chr02:31923447..31923471 (25 bp)
AAAAGGTTCAAATTCCAGCGTGAGG
LOC_Os02g52160
Os.20268.1.S1_at--457--6251Chr02:31923483..31923507 (25 bp)
GATGGTTTTGATCCGTCTGGAATGA
LOC_Os02g52160
Os.20268.1.S1_at--1121--891Chr02:31923875..31923899 (25 bp)
AGGCGAGCAGGTTATCCCATTGGCA
LOC_Os02g52160
Os.20268.1.S1_at--322--971Chr02:31924120..31924144 (25 bp)
AGGAGCTACTTCCTCTAGAGCTGAC
LOC_Os02g52160
Target Sequence 
GACAAACCAGTTCTGTCAGCTTGCTTATGATCTGCTCAATGGTTGCAAGATATGCACCTCCTATTTCTTATAACTTCCTG
AATCTCATTCGACTTGGTGGTGATGCCAAAACTACTTTTGAGAAGAGAATGGGAAACATCGATGATGCCGTTCCTTTCTT
TGGAAGAGGCTTCAACAGGATATATCCATTATTTATGGTTGTTTATACACTATTGGTTGCAAGTAATTTCTTTGGGCGTT
TGATTAACTTTTTCGGAAGCTGGAAAAGGTTCAAATTCCAGCGTGAGGAAGAAAATATGGATGGTTTTGATCCGTCTGGA
ATGATCATTCTGCAGAAAGAGAGGTCTTGGATTGAACAAGGATGTAAAGTAGGCGAGCAGGTTATCCCATTGGCAAGAAA
TTTCAATAATGTCAACACAGATGTTGAATCTGGAAAGGTGCCATTGGTTGAAAATACACTGGAGATGAAATCAGGAGCTA
CTTCCTCTAGAGCTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20268.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis