Browse Element(s) Details


Os.12257.1.S1_at

Description gb:AK074003.1
DB_XREF= gi:32984026
TID=Os.12257.1
CNT=70
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.12257 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-126-A02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033076P21, full insert sequence.
FL= gb:AK064389.1 gb:AK074003.1 gb:AK105464.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5215011/11Hsp20/alpha crystallin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52110NANA2+31887021..31890162retrotransposon protein, putative, unclassified
LOC_Os02g52120OsAffx.24830.1.S1_at11/112+31894315..31894800hypothetical protein
LOC_Os02g52130Os.5659.3.S1_x_at11/112+31902799..31905783F-box family protein, putative, expressed
LOC_Os02g52130Os.5659.1.S1_at10/112+31902799..31905783F-box family protein, putative, expressed
LOC_Os02g52140Os.16129.1.S1_at11/112+31910246..31914733Polyadenylate-binding protein 2, putative, expressed
LOC_Os02g52150Os.12257.1.S1_at11/112+31914985..31916538Hsp20/alpha crystallin family protein, expressed
LOC_Os02g52160Os.20268.1.S1_at11/112+31917945..31925043LMBR1 integral membrane family protein, putative, expressed
LOC_Os02g52160Os.20268.1.S2_at11/112+31917945..31925043LMBR1 integral membrane family protein, putative, expressed
LOC_Os02g52170Os.57301.1.S1_at11/112+31926416..31927447expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
GO:0009408biological_processresponse to heat
GO:0009507cellular_componentchloroplast
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12257.1.S1_at--815--3651Chr02:31915288..31915417 (25 bp)
CTTCTTCTCAGATGTGTTCCGTGAT
LOC_Os02g52150
Os.12257.1.S1_at--361--1311Chr02:31915402..31915426 (25 bp)
AGATGTGTTCCGTGATCCGTTCAGC
LOC_Os02g52150
Os.12257.1.S1_at--81--7411Chr02:31915413..31915437 (25 bp)
GTGATCCGTTCAGCGCGCCGCAGAG
LOC_Os02g52150
Os.12257.1.S1_at--1127--4131Chr02:31915542..31915566 (25 bp)
CGCTGCACCTGAGGGTGGACATGCC
LOC_Os02g52150
Os.12257.1.S1_at--407--7751Chr02:31915705..31915729 (25 bp)
GGTGTACAGGATGGACCAGATCAAG
LOC_Os02g52150
Os.12257.1.S1_at--1098--3731Chr02:31915751..31915775 (25 bp)
CTCAAGGTGGTCGTGCCCAAGGTGA
LOC_Os02g52150
Os.12257.1.S1_at--42--1011Chr02:31915803..31915827 (25 bp)
AGGTCAACGTCGAGTAGGAGCTCAA
LOC_Os02g52150
Os.12257.1.S1_at--125--1191Chr02:31915815..31915839 (25 bp)
AGTAGGAGCTCAATCCGCGCGCGTT
LOC_Os02g52150
Os.12257.1.S1_at--576--7971Chr02:31915867..31915891 (25 bp)
GGATCGTCTCCTTTTATCCAATAAG
LOC_Os02g52150
Os.12257.1.S1_at--644--10131Chr02:31915881..31915905 (25 bp)
TATCCAATAAGAAATGCGGCGTGCT
LOC_Os02g52150
Os.12257.1.S1_at--133--2291Chr02:31915892..31915916 (25 bp)
AAATGCGGCGTGCTGTAGCTTTGTT
LOC_Os02g52150
Target Sequence 
CTTCTTCTCAGATGTGTTCCGTGATCCGTTCAGCGCGCCGCAGAGCCTCGGGCGGCTGCTGAGCCTCATGGACGACCTGG
CGACGCCGGCCGGGCGCGCCGGCGCCGCGACGCTGCGGCGCGGGTGGAACGCGAAGGAGAGCGAGGAGGCGCTGCACCTG
AGGGTGGACATGCCGGGCCTGGGGAAGGAGCACGTGAAGGTGTGGGCGGAGCAGAACAGCCTCGTGATCAAGGGCGAGGG
GGAGAAGGAGGCCGGCGAGGACGAGGGCGCCGCCCCGGCGAGGTACAGCGGCCGCATCGAGCTCGCGCCGGAGGTGTACA
GGATGGACCAGATCAAGGCGGAGATGAAGAACGGCGTGCTCAAGGTGGTCGTGCCCAAGGTGAAGGAGGAGCAGCGCAGG
GACGTCTTCCAGGTCAACGTCGAGTAGGAGCTCAATCCGCGCGCGTTCGGCGTGCGAAGTTGCAGGATGCGGATGGATCG
TCTCCTTTTATCCAATAAGAAATGCGGCGTGCTGTAGCTTTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12257.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis