Browse Element(s) Details


Os.57301.1.S1_at

Description gb:AK111266.1
DB_XREF= gi:32996475
TID=Os.57301.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57301 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-180-F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-180-F07, full insert sequence.
FL= gb:AK111266.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5217011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52130Os.5659.3.S1_x_at11/112+31902799..31905783F-box family protein, putative, expressed
LOC_Os02g52130Os.5659.1.S1_at10/112+31902799..31905783F-box family protein, putative, expressed
LOC_Os02g52140Os.16129.1.S1_at11/112+31910246..31914733Polyadenylate-binding protein 2, putative, expressed
LOC_Os02g52150Os.12257.1.S1_at11/112+31914985..31916538Hsp20/alpha crystallin family protein, expressed
LOC_Os02g52160Os.20268.1.S1_at11/112+31917945..31925043LMBR1 integral membrane family protein, putative, expressed
LOC_Os02g52160Os.20268.1.S2_at11/112+31917945..31925043LMBR1 integral membrane family protein, putative, expressed
LOC_Os02g52170Os.57301.1.S1_at11/112+31926416..31927447expressed protein
LOC_Os02g52180Os.53242.1.S1_at11/112+31946062..31947229Plastocyanin-like domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57301.1.S1_at--995--4671Chr02:31926805..31926829 (25 bp)
GCGGCCAAGTGGATCCTTTTCTGAG
LOC_Os02g52170
Os.57301.1.S1_at--20--10372Chr04:23692398..23692437 (25 bp)
TTTTCTGAGGCCGTGCAAATGCATA
NONE
Os.57301.1.S1_at--464--711Chr02:31926733..31926757 (25 bp)
ATGATGAGATCGTCAGCGTGCGTCG
LOC_Os02g52170
Os.57301.1.S1_at--159--7311Chr02:31926716..31926740 (25 bp)
GTGCGTCGCTGTAAATTCTTCTTGG
LOC_Os02g52170
Os.57301.1.S1_at--1124--10251Chr02:31926658..31926682 (25 bp)
TTTGTTGATGCGGTTTTCTCTTTGG
LOC_Os02g52170
Os.57301.1.S1_at--406--6551Chr02:31926609..31926633 (25 bp)
GATTTTGGTCTATCCTGTACAGGCC
LOC_Os02g52170
Os.57301.1.S1_at--1015--5671Chr02:31926559..31926583 (25 bp)
GACATTCTTTGGTTAGCTCTTGCTG
LOC_Os02g52170
Os.57301.1.S1_at--744--6771Chr02:31926548..31926572 (25 bp)
GTTAGCTCTTGCTGCTGTGTATAGC
LOC_Os02g52170
Os.57301.1.S1_at--324--7531Chr02:31926502..31926526 (25 bp)
GTGGCTATTTGTTAACCTGCTTATA
LOC_Os02g52170
Os.57301.1.S1_at--400--10151Chr02:31926481..31926505 (25 bp)
TATACATACGACTGTTACGCCTGCA
LOC_Os02g52170
Os.57301.1.S1_at--147--6771Chr02:31926468..31926492 (25 bp)
GTTACGCCTGCACCATTATAGATCA
LOC_Os02g52170
Target Sequence 
GCGGCCAAGTGGATCCTTTTCTGAGGCCGTGCAAATGCATATGCATGCATGCAGCGAAGCGATGATGTCAAGATGATGAG
ATCGTCAGCGTGCGTCGCTGTAAATTCTTCTTGGCTTTCTAGTTTGGTTGGAACTTGGAAAAGTAGATTTGTTGATGCGG
TTTTCTCTTTGGTTGTTTTGGTTCATTTCTTTGTTTGATTTTGGTCTATCCTGTACAGGCCGGTTTGAAGCAAAATGACA
GTGATCGACATTCTTTGGTTAGCTCTTGCTGCTGTGTATAGCAAAAAAATGTTTCTGAATATTGTGGCTATTTGTTAACC
TGCTTATACATACGACTGTTACGCCTGCACCATTATAGATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57301.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis