Browse Element(s) Details


Os.16129.1.S1_at

Description gb:AK061269.1
DB_XREF= gi:32971287
TID=Os.16129.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16129 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023081D16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-212-D06, full insert sequence.
FL= gb:AK061269.1 gb:AK071146.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5214011/11Polyadenylate-binding protein 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52100NANA2+31880257..31886393retrotransposon protein, putative, unclassified
LOC_Os02g52110NANA2+31887021..31890162retrotransposon protein, putative, unclassified
LOC_Os02g52120OsAffx.24830.1.S1_at11/112+31894315..31894800hypothetical protein
LOC_Os02g52130Os.5659.3.S1_x_at11/112+31902799..31905783F-box family protein, putative, expressed
LOC_Os02g52130Os.5659.1.S1_at10/112+31902799..31905783F-box family protein, putative, expressed
LOC_Os02g52140Os.16129.1.S1_at11/112+31910246..31914733Polyadenylate-binding protein 2, putative, expressed
LOC_Os02g52150Os.12257.1.S1_at11/112+31914985..31916538Hsp20/alpha crystallin family protein, expressed
LOC_Os02g52160Os.20268.1.S1_at11/112+31917945..31925043LMBR1 integral membrane family protein, putative, expressed
LOC_Os02g52160Os.20268.1.S2_at11/112+31917945..31925043LMBR1 integral membrane family protein, putative, expressed
LOC_Os02g52170Os.57301.1.S1_at11/112+31926416..31927447expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16129.1.S1_at--786--651Chr02:31910973..31910997 (25 bp)
ATGAATCTGAACTGCATGGTCGTCA
LOC_Os02g52140
Os.16129.1.S1_at--363--671Chr02:31910801..31910825 (25 bp)
ATGAAGCAGCGTCCACCGCGTGGAT
LOC_Os02g52140
Os.16129.1.S1_at--310--331Chr02:31910778..31910802 (25 bp)
ATACAATCCTTATCATGGTTACCCA
LOC_Os02g52140
Os.16129.1.S1_at--522--171Chr02:31910733..31910757 (25 bp)
ATATTTCCCACCATATGGTTACGGG
LOC_Os02g52140
Os.16129.1.S1_at--222--8491Chr02:31910636..31910742 (25 bp)
TGGTTACGGGAGAGTCCCCAGATTC
LOC_Os02g52140
Os.16129.1.S1_at--831--3191Chr02:31910604..31910628 (25 bp)
CAATGCGCTACAGGCCATACTTTTG
LOC_Os02g52140
Os.16129.1.S1_at--1038--1371Chr02:31910474..31910498 (25 bp)
AGACATGCTGGGTGAATGCTTCCAC
LOC_Os02g52140
Os.16129.1.S1_at--839--11Chr02:31910440..31910464 (25 bp)
ATTCCATTTTGGTAACGTCCGCTCA
LOC_Os02g52140
Os.16129.1.S1_at--301--1911Chr02:31910426..31910450 (25 bp)
ACGTCCGCTCACTAGTTATCAGTAT
LOC_Os02g52140
Os.16129.1.S1_at--282--6891Chr02:31910398..31910422 (25 bp)
GTATCGTTGGTTCTGCAGTACGCAA
LOC_Os02g52140
Os.16129.1.S1_at--686--7391Chr02:31910280..31910304 (25 bp)
GTGATGGTTGATTACAGCCCTTATC
LOC_Os02g52140
Target Sequence 
ATGAATCTGAACTGCATGGTCGTCAGATAAAGGTGGCACCAAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCG
CGTGGATACAATCCTTATCATGGTTACCCATATAGATCGTATGGGGCCCCATATTTCCCACCATATGGTTACGGGAGAGT
CCCCAGATTCCGCCGTCCAATGCGCTACAGGCCATACTTTTGAAGTAAGAGGTTTTCATGACGTGGAACNCAACACCAAG
CCTANNCGCTNAGTCAGCCAAGTCNGTCCCAGAAATAATTCTACTATCTGGTATTTTAGTTTCCCAGCAGACATGCTGGG
TGAATGCTTCCACCCCCACCATATTCCATTTTGGTAACGTCCGCTCACTAGTTATCAGTATCTTGTATCGTTGGTTCTGC
AGTACGCAAAACGTAGTGTTATCTTATTATATTATATATACCTGCATCATATGATATTGGTTTGCCATACTTGGTAATAT
GTCTGGATATAAGCGTGGGATTGTGATGGTTGATTACAGCCCTTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16129.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis