Browse Element(s) Details


OsAffx.24830.1.S1_at

Description tigr:9630.m05129
TID=OsAffx.24830.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5212011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52090Os.27544.1.A1_at4/112+31872022..31877193retrotransposon protein, putative, unclassified
LOC_Os02g52090OsAffx.10711.1.S1_x_at1/112+31872022..31877193retrotransposon protein, putative, unclassified
LOC_Os02g52100NANA2+31880257..31886393retrotransposon protein, putative, unclassified
LOC_Os02g52110NANA2+31887021..31890162retrotransposon protein, putative, unclassified
LOC_Os02g52120OsAffx.24830.1.S1_at11/112+31894315..31894800hypothetical protein
LOC_Os02g52130Os.5659.3.S1_x_at11/112+31902799..31905783F-box family protein, putative, expressed
LOC_Os02g52130Os.5659.1.S1_at10/112+31902799..31905783F-box family protein, putative, expressed
LOC_Os02g52140Os.16129.1.S1_at11/112+31910246..31914733Polyadenylate-binding protein 2, putative, expressed
LOC_Os02g52150Os.12257.1.S1_at11/112+31914985..31916538Hsp20/alpha crystallin family protein, expressed
LOC_Os02g52160Os.20268.1.S1_at11/112+31917945..31925043LMBR1 integral membrane family protein, putative, expressed
LOC_Os02g52160Os.20268.1.S2_at11/112+31917945..31925043LMBR1 integral membrane family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24830.1.S1_at--733--5891Chr02:31894354..31894378 (25 bp)
GAGCTGGTCGTCAGTGGCCCAAACC
LOC_Os02g52120
OsAffx.24830.1.S1_at--1--8411Chr02:31894369..31894393 (25 bp)
GGCCCAAACCAGTTGGACGAGGATA
LOC_Os02g52120
OsAffx.24830.1.S1_at--270--1871Chr02:31894385..31894409 (25 bp)
ACGAGGATAAGAACGGTCTGGAGCA
LOC_Os02g52120
OsAffx.24830.1.S1_at--1008--5931Chr02:31894405..31894429 (25 bp)
GAGCAGAGATCTAGGAGGCACTCCT
LOC_Os02g52120
OsAffx.24830.1.S1_at--681--991Chr02:31894417..31894573 (25 bp)
AGGAGGCACTCCTCCTACTGCGGCA
LOC_Os02g52120
OsAffx.24830.1.S1_at--904--9911Chr02:31894568..31894588 (21 bp)
TACTGCGGCACTCTCATATCTTTGG
LOC_Os02g52120
OsAffx.24830.1.S1_at--608--8431Chr02:31894594..31894618 (25 bp)
GGCCTCAAGGGAGGGCTCCATATCA
LOC_Os02g52120
OsAffx.24830.1.S1_at--396--251Chr02:31894613..31894637 (25 bp)
ATATCATCACCAACATCGCTGACGG
LOC_Os02g52120
OsAffx.24830.1.S1_at--54--6751Chr02:31894644..31894668 (25 bp)
GTTCATGCACGACACTCTGTGGGAG
LOC_Os02g52120
OsAffx.24830.1.S1_at--960--8231Chr02:31894675..31894699 (25 bp)
GGCACCAACACGACAAAGCTCGACG
LOC_Os02g52120
OsAffx.24830.1.S1_at--506--1411Chr02:31894703..31894727 (25 bp)
AGACACCCACGGAGGCTAAGAGCAT
LOC_Os02g52120
Target Sequence 
GAGCTGGTCGTCAGTGGCCCAAACCAGTTGGACGAGGATAAGAACGGTCTGGAGCAGAGATCTAGGAGGCACTCCTCCTA
CTGCGGCACTCTCATATCTTTGGCGGCGGGCCTCAAGGGAGGGCTCCATATCATCACCAACATCGCTGACGGCATGGCGT
TCATGCACGACACTCTGTGGGAGGACGGAGGCACCAACACGACAAAGCTCGACGCCAAGACACCCACGGAGGCTAAGAGC
AT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24830.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis