Browse Element(s) Details


OsAffx.24833.1.S1_at

Description tigr:9630.m05161
TID=OsAffx.24833.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5238011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52340OsAffx.24832.1.S1_at11/112+32033056..32039261SHORT VEGETATIVE PHASE protein, putative, expressed
LOC_Os02g52340Os.4171.1.S1_s_at11/112+32033056..32039261SHORT VEGETATIVE PHASE protein, putative, expressed
LOC_Os02g52350OsAffx.12609.1.S1_at11/112+32040339..32041341hypothetical protein
LOC_Os02g52360Os.53007.1.S1_at11/112+32041897..32046431peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os02g52370Os.53665.1.S1_at11/112+32046713..32050017armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os02g52380OsAffx.24833.1.S1_at11/112+32053128..32054420hypothetical protein
LOC_Os02g52390OsAffx.24834.1.S1_x_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.15022.1.S1_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.27478.1.A1_s_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390OsAffx.24834.1.S1_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.39065.1.A1_s_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.27478.2.A1_s_at10/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.54818.1.S1_at1/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52400Os.7555.1.S1_at11/112+32063121..32064413expressed protein
LOC_Os02g52410Os.48354.1.S1_at11/112+32065339..32074577expressed protein
LOC_Os02g52410Os.45957.4.S1_x_at5/112+32065339..32074577expressed protein
LOC_Os02g52410Os.24327.1.A1_at1/112+32065339..32074577expressed protein
LOC_Os02g52420Os.17368.1.S1_at10/112+32075424..32079700methionine aminopeptidase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24833.1.S1_at--500--3191Chr02:32053701..32053725 (25 bp)
CAAGTCGCCGATGTGGTCTCCCAGA
LOC_Os02g52380
OsAffx.24833.1.S1_at--313--7811Chr02:32053687..32053711 (25 bp)
GGTCTCCCAGACTACGCGGCAAGGT
LOC_Os02g52380
OsAffx.24833.1.S1_at--144--4651Chr02:32053654..32053678 (25 bp)
GCGTCGACTTTGATCCGTTCTCCAC
LOC_Os02g52380
OsAffx.24833.1.S1_at--171--1651Chr02:32053457..32053481 (25 bp)
AGCGACATGCTCCTGTTCCGCAGGT
LOC_Os02g52380
OsAffx.24833.1.S1_at--1072--6671Chr02:32053443..32053467 (25 bp)
GTTCCGCAGGTCAGCGGCGAAAGCT
LOC_Os02g52380
OsAffx.24833.1.S1_at--1081--2071Chr02:32053402..32053426 (25 bp)
ACATCAGCAAGGAGCCGGTGTTCAA
LOC_Os02g52380
OsAffx.24833.1.S1_at--1150--2831Chr02:32053379..32053403 (25 bp)
AAGTACTCGCCGGTGCAACAGCTCG
LOC_Os02g52380
OsAffx.24833.1.S1_at--132--2491Chr02:32053363..32053387 (25 bp)
AACAGCTCGGGACGCCGGTCAAGAA
LOC_Os02g52380
OsAffx.24833.1.S1_at--635--8711Chr02:32053302..32053326 (25 bp)
TGTCTCCGCCGGGAAGCACAAGAAG
LOC_Os02g52380
OsAffx.24833.1.S1_at--1090--5071Chr02:32053188..32053212 (25 bp)
GCACCGGCTGGCCAAAGGGTTCAAC
LOC_Os02g52380
OsAffx.24833.1.S1_at--597--4371Chr02:32053177..32053201 (25 bp)
CCAAAGGGTTCAACGGCTCGTCGCT
LOC_Os02g52380
Target Sequence 
CAAGTCGCCGATGTGGTCTCCCAGACTACGCGGCAAGGTCGGTTCCGGCGTCGACTTTGATCCGTTCTCCACCGCCCTGG
CGAAGGCAGCCAAGGGCCCCTCCCCTCTCGGCGCCGGCGCCAAAGACACCGCCGACGCCGGAACAGCCTCCTCGCCCAAG
AAGCCAGACCCCGTCTCCGTCACGTCGCCGCGCTGCATTCCTCCGGCGACGATGATCAATGGCGGGAGGAAGAAGTGGCG
GCTCAGCGACATGCTCCTGTTCCGCAGGTCAGCGGCGAAAGCTCGCGCCGCCGGCGCCAACATCAGCAAGGAGCCGGTGT
TCAAGTACTCGCCGGTGCAACAGCTCGGGACGCCGGTCAAGAAGGCGACCGCGGGTCAGTCCGCCGCCGCCAACGGCGAT
GTCTCCGCCGGGAAGCACAAGAAGCAGAGCAAGAAGGCTACAGCGGCGGAGGACGGCATGGCATCGCCGCACCGGCAGAG
CGTGATGGGGTGCGTCCGGCTGAACCCCGGCCTGCACCGGCTGGCCAAAGGGTTCAACGGCTCGTCGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24833.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis