Browse Element(s) Details


Os.17368.1.S1_at

Description gb:AK068344.1
DB_XREF= gi:32978362
TID=Os.17368.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.17368 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013149L20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013149L20, full insert sequence.
FL= gb:AK068344.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5242010/11methionine aminopeptidase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52380OsAffx.24833.1.S1_at11/112+32053128..32054420hypothetical protein
LOC_Os02g52390OsAffx.24834.1.S1_x_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.15022.1.S1_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.27478.1.A1_s_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390OsAffx.24834.1.S1_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.39065.1.A1_s_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.27478.2.A1_s_at10/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.54818.1.S1_at1/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52400Os.7555.1.S1_at11/112+32063121..32064413expressed protein
LOC_Os02g52410Os.48354.1.S1_at11/112+32065339..32074577expressed protein
LOC_Os02g52410Os.45957.4.S1_x_at5/112+32065339..32074577expressed protein
LOC_Os02g52410Os.24327.1.A1_at1/112+32065339..32074577expressed protein
LOC_Os02g52420Os.17368.1.S1_at10/112+32075424..32079700methionine aminopeptidase, putative, expressed
LOC_Os02g52430Os.27901.1.S1_at11/112+32082237..32084304Regulator of ribonuclease-like protein 1, putative, expressed
LOC_Os02g52440OsAffx.12610.1.S1_at11/112+32085646..32086086hypothetical protein
LOC_Os02g52450Os.15987.1.S1_at11/112+32086877..32088937Regulator of ribonuclease-like protein 3, putative, expressed
LOC_Os02g52460Os.54394.1.S1_at11/112+32089453..32092841Zinc knuckle family protein, expressed
LOC_Os02g52470OsAffx.23623.1.S1_x_at7/112+32093970..32097106VEG136 protein, putative, expressed
LOC_Os02g52470OsAffx.23623.1.S1_at2/112+32093970..32097106VEG136 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0016485biological_processprotein processing
GO:0031365biological_processN-terminal protein amino acid modification
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0004239molecular_functionmethionyl aminopeptidase activity
GO:0008235molecular_functionmetalloexopeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17368.1.S1_at--608--2931Chr02:32076941..32076965 (25 bp)
AAGGCTATATCAATCTGCGCCCCTG
LOC_Os02g52420
Os.17368.1.S1_at--382--4111NONE
CGAACTATACAGGACCATGCAGATA
NONE
Os.17368.1.S1_at--908--6931Chr02:32076356..32076380 (25 bp)
GTAGTTCGACAGTTCGTCGGTCATG
LOC_Os02g52420
Os.17368.1.S1_at--613--6831Chr02:32076318..32076342 (25 bp)
GTTTCATGCTGAACCTGTGGTGCTT
LOC_Os02g52420
Os.17368.1.S1_at--704--8631Chr02:32075936..32076327 (25 bp)
TGTGGTGCTTCATTTCCGAAACAAT
LOC_Os02g52420
Os.17368.1.S1_at--242--7531Chr02:32076066..32076090 (25 bp)
GGGCCGTATGACATTGAACCAAACA
LOC_Os02g52420
Os.17368.1.S1_at--279--3031Chr02:32075699..32075723 (25 bp)
AATCCAGTTATATGGTCCGATGACT
LOC_Os02g52420
Os.17368.1.S1_at--634--3851Chr02:32075662..32075686 (25 bp)
CTGAAGACGGCAGCTTGTCAGCACA
LOC_Os02g52420
Os.17368.1.S1_at--650--4571Chr02:32075605..32075629 (25 bp)
GCGCGGAGATACTGACGCAGTGTTA
LOC_Os02g52420
Os.17368.1.S1_at--486--3691Chr02:32075541..32075565 (25 bp)
CTATTTCTATAAGTGGCTGGCTGGA
LOC_Os02g52420
Os.17368.1.S1_at--201--8351Chr02:32075527..32075551 (25 bp)
GGCTGGCTGGAGATGGAATCCTACA
LOC_Os02g52420
Target Sequence 
AAGGCTATATCAATCTGCGCCCCTGGGGTGGAGATCAAACGTATTGGTCGAACTATACAGGACCATGCAGATAAATTCAA
GTTTGGTGTAGTTCGACAGTTCGTCGGTCATGGGGTTGGACAAGTGTTTCATGCTGAACCTGTGGTGCTTCATTTCCGAA
ACAATGAATGGGGCCGTATGACATTGAACCAAACATTTACTATAGAGCCCNATGCTAACCGTGGGGAGCGTAAATCCAGT
TATATGGTCCGATGACTGGANCAGCGGTGACTGAAGACGGCAGCTTGTCAGCACANGTTTGAGCACACAATACTGATTAC
AGAGGATGGCGCGGAGATACTGACGCAGTGTTAAGGGCGGACGAGGATTAGAGGCGAGTAATGACAGTGATTCTATTTCT
ATAAGTGGCTGGCTGGAGATGGAATCCTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17368.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis