Browse Element(s) Details


Os.20186.1.S1_at

Description gb:AK066379.1
DB_XREF= gi:32976397
TID=Os.20186.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20186 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013065N04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013065N04, full insert sequence.
FL= gb:AK066379.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1536011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g15280OsAffx.20877.1.S1_at1/115+8644822..8647071retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15280Os.48015.1.A1_x_at1/115+8644822..8647071retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15280OsAffx.10665.2.S1_at1/115+8644822..8647071retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15290NANA5+8649347..8651906retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15300Os.55077.1.S1_at11/115+8655868..8658571expressed protein
LOC_Os05g15310OsAffx.26905.1.S1_at11/115+8658997..8659323hypothetical protein
LOC_Os05g15320NANA5+8659936..8663086transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g15330OsAffx.26906.1.S1_at10/115+8663358..8664316hypothetical protein
LOC_Os05g15340NANA5+8666397..8667505retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g15350OsAffx.14706.1.S1_at11/115+8668015..8669655hypothetical protein
LOC_Os05g15350OsAffx.14659.1.S1_at2/115+8668015..8669655hypothetical protein
LOC_Os05g15360Os.27007.1.A1_at11/115+8671073..8675764expressed protein
LOC_Os05g15360Os.20186.1.S1_at11/115+8671073..8675764expressed protein
LOC_Os05g15360Os.49286.1.S1_x_at10/115+8671073..8675764expressed protein
LOC_Os05g15360Os.24955.1.A1_x_at1/115+8671073..8675764expressed protein
LOC_Os05g15370Os.27007.1.A1_at3/115+8676822..8683310ribosomal protein L13 containing protein, expressed
LOC_Os05g15370Os.49286.1.S1_x_at2/115+8676822..8683310ribosomal protein L13 containing protein, expressed
LOC_Os05g15370Os.9815.1.S1_at2/115+8676822..8683310ribosomal protein L13 containing protein, expressed
LOC_Os05g15370Os.24955.1.A1_x_at1/115+8676822..8683310ribosomal protein L13 containing protein, expressed
LOC_Os05g15380OsAffx.31445.1.S1_at11/115+8684556..8685685lipase class 3 family protein, putative
LOC_Os05g15380OsAffx.31445.1.S1_x_at11/115+8684556..8685685lipase class 3 family protein, putative
LOC_Os05g15390OsAffx.26907.1.S1_at11/115+8686719..8687499hypothetical protein
LOC_Os05g15400NANA5+8689001..8692779hypothetical protein
LOC_Os05g15410OsAffx.4345.1.S1_at11/115+8696438..8696903hypothetical protein
LOC_Os05g15420Os.27691.1.S1_x_at1/115+8700243..8701208retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20186.1.S1_at--140--4752Chr05:8672446..8672470 (25 bp)
GCTGTTGTTTGAACTGAGCAAAAAG
LOC_Os05g15360
Os.20186.1.S1_at--192--8912Chr05:8682544..8682563 (20 bp)
TGAGCAAAAAGCACTTGCAGACTTG
NONE
Os.20186.1.S1_at--241--10511Chr05:8672082..8672106 (25 bp)
TTCACACTAGAAGGTATGTCTTCTC
LOC_Os05g15360
Os.20186.1.S1_at--827--5311Chr05:8672073..8672097 (25 bp)
GAAGGTATGTCTTCTCGTTGGTGAA
LOC_Os05g15360
Os.20186.1.S1_at--169--771Chr05:8672067..8672091 (25 bp)
ATGTCTTCTCGTTGGTGAAGTGATA
LOC_Os05g15360
Os.20186.1.S1_at--237--5331Chr05:8672051..8672075 (25 bp)
GAAGTGATAAAGCTACTGTTCATTT
LOC_Os05g15360
Os.20186.1.S1_at--414--10371Chr05:8671999..8672023 (25 bp)
TTTTTTGCAGGGTTAGATATACACT
LOC_Os05g15360
Os.20186.1.S1_at--918--6491Chr05:8671984..8672008 (25 bp)
GATATACACTTATGTTAGCAAACAC
LOC_Os05g15360
Os.20186.1.S1_at--85--6791Chr05:8671971..8671995 (25 bp)
GTTAGCAAACACTTGGATCTTTTCG
LOC_Os05g15360
Os.20186.1.S1_at--591--2071Chr05:8671961..8671985 (25 bp)
ACTTGGATCTTTTCGTGAACTATAA
LOC_Os05g15360
Os.20186.1.S1_at--595--8971Chr05:8671946..8671970 (25 bp)
TGAACTATAAGGATGGTTGTGACTT
LOC_Os05g15360
Target Sequence 
GCTGTTGTTTGAACTGAGCAAAAAGCACTTGCAGACTTGAGAAGAATCAATTTAGATGGTTTGAGATGGTGTGTATTTGA
CGCAAAGGGCCAGGTCCTTGGACGGTTGGCGTCCCAAATAGCTGTTGTGCTTCAGGGCAAGGACAAGCCAACTTATGCAC
CACATGTGGAAAACAGAGACATGTGCGTTGTGCTTAATGGATAAGATAACTGAAATGTAACTGTAATTATTGTTGTACAC
ATCTTTACTATGGTGCTTCTATGTCTTAATTCAGTTAAGTTTTCACACTAGAAGGTATGTCTTCTCGTTGGTGAAGTGAT
AAAGCTACTGTTCATTTTATTCATTGTTTAATGATATAGACTTTTTTTTTGCAGGGTTAGATATACACTTATGTTAGCAA
ACACTTGGATCTTTTCGTGAACTATAAGGATGGTTGTGACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20186.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis