Browse Element(s) Details


Os.20204.4.S1_at

Description gb:AK102493.1
DB_XREF= gi:32987702
TID=Os.20204.4
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20204 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) histone deacetylase HDAC3 mRNA, complete cds; alternatively spliced
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033094P21, full insert sequence.
FL= gb:AK102493.1 gb:AK120027.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5723011/11regulatory protein RecX containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57180Os.49944.1.S1_at10/114+33848590..33851736oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os04g57190OsAffx.14455.1.S1_s_at11/114+33854103..33858227Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os04g57190Os.24656.1.S1_at11/114+33854103..33858227Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os04g57190OsAffx.14455.1.S1_at9/114+33854103..33858227Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os04g57200Os.7115.1.S1_a_at11/114+33861558..33862845heavy metal-associated domain containing protein, expressed
LOC_Os04g57210Os.9650.1.A1_at11/114+33864372..33868483Actin family protein, expressed
LOC_Os04g57220Os.22723.1.S1_a_at11/114+33868683..33871611Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os04g57220Os.22723.3.S1_x_at5/114+33868683..33871611Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os04g57230Os.20204.4.S1_at11/114+33872604..33876347regulatory protein RecX containing protein, expressed
LOC_Os04g57230Os.5935.1.S1_at11/114+33872604..33876347regulatory protein RecX containing protein, expressed
LOC_Os04g57240Os.51414.1.S1_at4/114+33876674..33877784hypothetical protein
LOC_Os04g57250OsAffx.23181.1.S1_x_at11/114+33879770..33880396hypothetical protein
LOC_Os04g57260Os.12273.1.S1_at1/114+33882989..33883390expressed protein
LOC_Os04g57270Os.12273.1.S1_at11/114+33885403..33885908expressed protein
LOC_Os04g57280Os.12275.1.S1_at11/114+33887578..33888100expressed protein
LOC_Os04g57290Os.27287.1.S1_at11/114+33891420..33893101F-box domain containing protein, expressed
LOC_Os04g57300Os.38230.1.S1_at11/114+33895065..33897846phosphatidylinositol 3- and 4-kinase family protein, putative, expressed
LOC_Os04g57310Os.15283.1.S1_at11/114+33900474..33904540Uncharacterized conserved protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006282biological_processregulation of DNA repair
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20204.4.S1_at--51--1431Chr04:33875179..33875203 (25 bp)
AGAAACCTCCCTGAGTATGGAATTG
LOC_Os04g57230
Os.20204.4.S1_at--26--6091Chr04:33875191..33875215 (25 bp)
GAGTATGGAATTGATCCTTCTCCTT
LOC_Os04g57230
Os.20204.4.S1_at--124--4771Chr04:33875217..33875241 (25 bp)
GCTGCTTTTCAACTTTGCAATTTAC
LOC_Os04g57230
Os.20204.4.S1_at--777--2971Chr04:33875242..33875266 (25 bp)
AATGGTTTGCTATTTCTGTCGCAAG
LOC_Os04g57230
Os.20204.4.S1_at--716--2831Chr04:33875264..33875288 (25 bp)
AAGTTTAGCTTGCAGGTTCCTTCTA
LOC_Os04g57230
Os.20204.4.S1_at--402--10731Chr04:33875273..33875297 (25 bp)
TTGCAGGTTCCTTCTATAGTTATGA
LOC_Os04g57230
Os.20204.4.S1_at--6--5251Chr04:33875296..33875320 (25 bp)
GAATCTGGTTTCTGATTAACATGCC
LOC_Os04g57230
Os.20204.4.S1_at--207--10491Chr04:33875311..33875335 (25 bp)
TTAACATGCCATTTTGAACAACGGG
LOC_Os04g57230
Os.20204.4.S1_at--23--7831Chr04:33875352..33875376 (25 bp)
GGTCATCATCCAACTTACATTAACT
LOC_Os04g57230
Os.20204.4.S1_at--1137--10471Chr04:33875366..33875390 (25 bp)
TTACATTAACTCATCCAATTGCATG
LOC_Os04g57230
Os.20204.4.S1_at--730--10491Chr04:33875392..33875416 (25 bp)
TTAACATGGTCAATCAACGCATAGG
LOC_Os04g57230
Target Sequence 
AGAAACCTCCCTGAGTATGGAATTGATCCTTCTCCTTNGCTGCTTTTCAACTTTGCAATTTACAATGGTTTGCTATTTCT
GTCGCAAGTTTAGCTTGCAGGTTCCTTCTATAGTTATGAATCTGGTTTCTGATTAACATGCCATTTTGAACAACGGGGAA
CGATGATTAACATGGTCATCATCCAACTTACATTAACTCATCCAATTGCATGATTAACATGGTCAATCAACGCATAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20204.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis