Browse Element(s) Details


Os.20212.1.S1_at

Description gb:AK106180.1
DB_XREF= gi:32991389
TID=Os.20212.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20212 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-208-D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-208-D02, full insert sequence.
FL= gb:AK106180.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g206305/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g20580OsAffx.31076.1.S1_x_at10/1111+11909418..11910874hypothetical protein
LOC_Os11g20580OsAffx.31076.1.S1_at10/1111+11909418..11910874hypothetical protein
LOC_Os11g20580OsAffx.26148.1.S1_at6/1111+11909418..11910874hypothetical protein
LOC_Os11g20580OsAffx.26148.1.S1_x_at5/1111+11909418..11910874hypothetical protein
LOC_Os11g20590Os.26886.3.S1_x_at6/1111+11911769..11915073transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g20590Os.26886.1.S1_x_at6/1111+11911769..11915073transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g20600OsAffx.31077.1.S1_at10/1111+11916239..11917028hypothetical protein
LOC_Os11g20600Os.51672.2.S1_at1/1111+11916239..11917028hypothetical protein
LOC_Os11g20610Os.52609.1.S1_at1/1111+11924285..11928849retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g20620NANA11+11929106..11930080retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g20630OsAffx.18962.1.S1_at10/1111+11934921..11935356hypothetical protein
LOC_Os11g20630Os.20212.1.S1_at5/1111+11934921..11935356hypothetical protein
LOC_Os11g20640OsAffx.19542.3.S1_x_at7/1111+11938771..11945309retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g20640OsAffx.21754.1.S1_x_at1/1111+11938771..11945309retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g20650NANA11+11946602..11948046retrotransposon protein, putative, LINE subclass
LOC_Os11g20660OsAffx.31078.1.S1_at11/1111+11950768..11952335hypothetical protein
LOC_Os11g20670Os.7307.3.S1_x_at1/1111+11953647..11954911retrotransposon protein, putative, unclassified
LOC_Os11g20689Os.8896.1.S1_a_at11/1111+11958113..119656613' exoribonuclease family domain 1-containing protein, putative, expressed
LOC_Os11g20689Os.50608.1.S1_at11/1111+11958113..119656613' exoribonuclease family domain 1-containing protein, putative, expressed
LOC_Os11g20689OsAffx.21235.1.S1_at1/1111+11958113..119656613' exoribonuclease family domain 1-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20212.1.S1_at--515--8451Chr11:11935246..11935270 (25 bp)
GGCCAAATGCAGCATGTAATGCGCT
LOC_Os11g20630
Os.20212.1.S1_at--876--4991Chr11:11935235..11935259 (25 bp)
GCATGTAATGCGCTGATTTAAACAC
LOC_Os11g20630
Os.20212.1.S1_at--1144--6071Chr11:11935071..11935095 (25 bp)
GAGTATCATGAATTCCTACATCTAG
LOC_Os11g20630
Os.20212.1.S1_at--1023--5191Chr11:11935062..11935086 (25 bp)
GAATTCCTACATCTAGACAGTCTCG
LOC_Os11g20630
Os.20212.1.S1_at--295--451Chr11:11935052..11935076 (25 bp)
ATCTAGACAGTCTCGATGTTATATA
LOC_Os11g20630
Os.20212.1.S1_at--917--5131Chr11:11934154..11934178 (25 bp)
GCAACAAGGAAGCATATGCCCTTTT
NONE
Os.20212.1.S1_at--561--3571Chr11:11934142..11934166 (25 bp)
CATATGCCCTTTTGTCGTTTGATTG
NONE
Os.20212.1.S1_at--622--10871Chr11:11934124..11934144 (21 bp)
TTGGCCGCAACACTCAGGTCAATGT
NONE
Os.20212.1.S1_at--626--8771Chr11:11933945..11933969 (25 bp)
TGTATTATATCTGGTCAGTGAACCT
NONE
Os.20212.1.S1_at--78--2071Chr11:11933869..11933893 (25 bp)
ACTTGTCATGTAACTGATTTACGGA
NONE
Os.20212.1.S1_at--731--6531Chr11:11933854..11933878 (25 bp)
GATTTACGGATAACCTGTGATCTTT
NONE
Target Sequence 
GGCCAAATGCAGCATGTAATGCGCTGATTTAAACACATTATAAAAGCTGTTCTGTAGGAGGAAAATCATTCTTGAAGATT
GAGTATCATGAATTCCTACATCTAGACAGTCTCGATGTTATATAAAGAACTGTATAATTTGATGAATCGGAAGCAACAAG
GAAGCATATGCCCTTTTGTCGTTTGATTGGCCGCAACACTCAGGTCAATGTGTGAACGGCTATTTGGCATTTGGCTGGAT
TTGGTGGTCAGTGACTTGTACTAGTGATGTATTATATCTGGTCAGTGAACCTGTGATGTAATTGAACATGCTTTGGATAG
TGATTTGTGGATGTAATTAGCTGACTTGTCATGTAACTGATTTACGGATAACCTGTGATCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20212.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis