Browse Element(s) Details


OsAffx.31077.1.S1_at

Description tigr:9639.m01934
TID=OsAffx.31077.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2060010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g20554Os.53979.1.S1_at11/1111+11886437..11902402Helicase associated domain family protein, expressed
LOC_Os11g20570Os.26886.6.S1_s_at10/1111+11905723..11908817transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g20570Os.26886.2.S1_s_at7/1111+11905723..11908817transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g20570OsAffx.16467.1.S1_at7/1111+11905723..11908817transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g20570OsAffx.3425.1.S1_at1/1111+11905723..11908817transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g20580OsAffx.31076.1.S1_x_at10/1111+11909418..11910874hypothetical protein
LOC_Os11g20580OsAffx.31076.1.S1_at10/1111+11909418..11910874hypothetical protein
LOC_Os11g20580OsAffx.26148.1.S1_at6/1111+11909418..11910874hypothetical protein
LOC_Os11g20580OsAffx.26148.1.S1_x_at5/1111+11909418..11910874hypothetical protein
LOC_Os11g20590Os.26886.3.S1_x_at6/1111+11911769..11915073transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g20590Os.26886.1.S1_x_at6/1111+11911769..11915073transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g20600OsAffx.31077.1.S1_at10/1111+11916239..11917028hypothetical protein
LOC_Os11g20600Os.51672.2.S1_at1/1111+11916239..11917028hypothetical protein
LOC_Os11g20610Os.52609.1.S1_at1/1111+11924285..11928849retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g20620NANA11+11929106..11930080retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g20630OsAffx.18962.1.S1_at10/1111+11934921..11935356hypothetical protein
LOC_Os11g20630Os.20212.1.S1_at5/1111+11934921..11935356hypothetical protein
LOC_Os11g20640OsAffx.19542.3.S1_x_at7/1111+11938771..11945309retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g20640OsAffx.21754.1.S1_x_at1/1111+11938771..11945309retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31077.1.S1_at--1162--7631Chr11:11916300..11916324 (25 bp)
GGGATGCCGAGTTCGTGATCACTAG
LOC_Os11g20600
OsAffx.31077.1.S1_at--68--1231Chr11:11916309..11916718 (25 bp)
AGTTCGTGATCACTAGACGCGCCGA
LOC_Os11g20600
OsAffx.31077.1.S1_at--546--7391NONE
GTGATCACTAGACGCGCCGACTCCA
NONE
OsAffx.31077.1.S1_at--212--2711Chr11:11916876..11916900 (25 bp)
AAGCTTGCGCCCGTTGTCGGTGAAG
LOC_Os11g20600
OsAffx.31077.1.S1_at--189--10711Chr11:11916880..11916904 (25 bp)
TTGCGCCCGTTGTCGGTGAAGGCAC
LOC_Os11g20600
OsAffx.31077.1.S1_at--335--8991Chr11:11916896..11916920 (25 bp)
TGAAGGCACGGTTGGCGCCGGCGAC
LOC_Os11g20600
OsAffx.31077.1.S1_at--1162--7672Chr11:11916928..11916952 (25 bp)
GGGTCAAGCTCATCATCAGTGTCAG
LOC_Os11g20600
OsAffx.31077.1.S1_at--1017--2692Chr11:11916933..11916957 (25 bp)
AAGCTCATCATCAGTGTCAGCCATG
LOC_Os11g20600
OsAffx.31077.1.S1_at--12--411Chr11:11916942..11916966 (25 bp)
ATCAGTGTCAGCCATGAAGCGAACA
LOC_Os11g20600
OsAffx.31077.1.S1_at--721--1691Chr11:11916951..11916975 (25 bp)
AGCCATGAAGCGAACACAGGAGGTC
LOC_Os11g20600
OsAffx.31077.1.S1_at--520--4112Chr11:11916961..11916985 (25 bp)
CGAACACAGGAGGTCGACGATGCGC
LOC_Os11g20600
Target Sequence 
GGGATGCCGAGTTCGTGATCACTAGACGCGCCGACTCCAAGCTTGCGCCCGTTGTCGGTGAAGGCACGGTTGGCGCCGGC
GACGATGACGGGGTCAAGCTCATCATCAGTGTCAGCCATGAAGCGAACACAGGAGGTCGACGATGCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31077.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis