Browse Element(s) Details


Os.20278.1.S1_at

Description gb:AK103523.1
DB_XREF= gi:32988732
TID=Os.20278.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20278 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033131K11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033131K11, full insert sequence.
FL= gb:AK103523.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4633011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46310Os.25557.1.S1_at10/116+28058356..28064171Metal transporter Nramp1, putative, expressed
LOC_Os06g46320OsAffx.15950.1.S1_at10/116+28077387..28077767NA
LOC_Os06g46330Os.20278.1.S1_at11/116+28089141..28093399Protein kinase domain containing protein, expressed
LOC_Os06g46340Os.48503.2.S1_at11/116+28099803..28104864Alpha-glucosidase precursor, putative, expressed
LOC_Os06g46350OsAffx.15951.1.S1_at11/116+28108238..28109953Patatin-like phospholipase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20278.1.S1_at--21--1811Chr06:28089695..28089719 (25 bp)
ACCCAGGACATCTCGAAACGTCGAC
LOC_Os06g46330
Os.20278.1.S1_at--53--2391Chr06:28089680..28089704 (25 bp)
AAACGTCGACCCACCATGTCAATGG
LOC_Os06g46330
Os.20278.1.S1_at--470--751Chr06:28089665..28089689 (25 bp)
ATGTCAATGGTCATCAGCATGCTGA
LOC_Os06g46330
Os.20278.1.S1_at--105--7671Chr06:28089589..28089613 (25 bp)
GGGATTTCAGGGACCTCAAGCTCAG
LOC_Os06g46330
Os.20278.1.S1_at--7--4611Chr06:28089451..28089475 (25 bp)
GCGACTGATGGGTCTCTTTCTGAAA
LOC_Os06g46330
Os.20278.1.S1_at--1117--152Chr11:18103630..18103938 (25 bp)
ATTATCTTCATTTTTTGTGCTTGCA
NONE
Os.20278.1.S1_at--1086--10111Chr06:28089355..28089379 (25 bp)
TATGTAGAATTTGCATCATCCCCAT
LOC_Os06g46330
Os.20278.1.S1_at--105--5511Chr06:28089319..28089343 (25 bp)
GAACACATTGCTGAGTCACACACAC
LOC_Os06g46330
Os.20278.1.S1_at--59--2151Chr06:28089258..28089282 (25 bp)
ACAGCCCATTTCTGTCCTGAATTAA
LOC_Os06g46330
Os.20278.1.S1_at--267--7131Chr06:28089214..28089238 (25 bp)
GTCATCAAGAAACCACTACTCCAGT
LOC_Os06g46330
Os.20278.1.S1_at--833--3591Chr06:28089156..28089180 (25 bp)
CATTCCAACTGAGAACTGTGCTTCA
LOC_Os06g46330
Target Sequence 
ACCCAGGACATCTCGAAACGTCGACCCACCATGTCAATGGTCATCAGCATGCTGACAGGCGAGATGGAGGTCGACAAAGA
GAAGATCAGCAAGCCTGATGTAATCAGGGATTTCAGGGACCTCAAGCTCAGGAGCAAGGCCACATCCTCCTCCTCACTGT
TGACCTCCNATCATGGCGCGCTNAACTCCCTCGTCNTCTCAGGAGACGACGCGCACCTCCATCACGGTCACCGCCATATC
GGACCGCGACTGATGGGTCTCTTTCTGAAAGTGTAAAGTTGTGTAGAGGAAAACCGTAGCGTAGACGATATTATCTTCAT
TTTTTGTGCTTGCATGATCTTTATGTAGAATTTGCATCATCCCCATNCACTGAGCCTGAACACATTGCTGAGTCACACAC
ACACACACACACANANANATATATATATNTATATATATACAGCCCATTTCTGTCCTGAATTAACTCTGTCAATTGTCNAA
GTGTCATCAAGAAACCACTACTCCAGTGAATTGCTGAAAGCCTGGAAAGGAAGTTGCATACATTCCAACTGAGAACTGTG
CTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20278.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis