Browse Element(s) Details


Os.20292.1.S1_s_at

Description gb:AK071680.1
DB_XREF= gi:32981703
TID=Os.20292.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.20292 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023108B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023108B05, full insert sequence.
FL= gb:AK071680.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4974811/11purine permease family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49690Os.5431.1.S1_at11/114+29417103..29418943protein kinase family protein, putative, expressed
LOC_Os04g49700Os.51709.2.S1_at11/114+29421872..29423292Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g49710NANA4+29432720..29433136hypothetical protein
LOC_Os04g49720OsAffx.26542.1.S1_s_at11/114+29435004..29435635pectinesterase inhibitor domain containing protein, expressed
LOC_Os04g49720OsAffx.26542.1.S1_at11/114+29435004..29435635pectinesterase inhibitor domain containing protein, expressed
LOC_Os04g49730OsAffx.14347.1.S1_at11/114+29437004..29437564pectinesterase inhibitor domain containing protein
LOC_Os04g49739Os.25086.1.A1_at11/114+29439612..29441489purine permease family protein, putative, expressed
LOC_Os04g49748Os.20292.1.S1_s_at11/114+29441895..29443371purine permease family protein, putative, expressed
LOC_Os04g49748Os.20292.1.S1_at11/114+29441895..29443371purine permease family protein, putative, expressed
LOC_Os04g49748OsAffx.9915.1.S1_x_at1/114+29441895..29443371purine permease family protein, putative, expressed
LOC_Os04g49757Os.20614.3.S1_x_at11/114+29447058..29453541purine permease family protein, putative, expressed
LOC_Os04g49757Os.20614.2.S1_at11/114+29447058..29453541purine permease family protein, putative, expressed
LOC_Os04g49770OsAffx.14349.1.A1_at11/114+29454372..29455993hypothetical protein
LOC_Os04g49780NANA4+29457852..29461477transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g49790Os.55410.1.S1_at11/114+29463387..29468880retrotransposon protein, putative, Ty1-copia subclass, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005345molecular_functionpurine transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20292.1.S1_s_at--1131--8851Chr04:29442787..29442811 (25 bp)
TGATGCAGCTCACGTTCGACACGGT
LOC_Os04g49748
Os.20292.1.S1_s_at--296--1931Chr04:29442807..29442831 (25 bp)
ACGGTGCTCAGGAGCAACGCGGCAC
LOC_Os04g49748
Os.20292.1.S1_s_at--715--8531Chr04:29442981..29443005 (25 bp)
TGGACGGCCATCTCGTGGCAGCTCG
LOC_Os04g49748
Os.20292.1.S1_s_at--507--7231Chr04:29443043..29443067 (25 bp)
GTCGCTGTTCACGAACGTGATCAGC
LOC_Os04g49748
Os.20292.1.S1_s_at--797--6431Chr04:29443091..29443115 (25 bp)
GATCATGGCGGTGATCTTCCTCGGC
LOC_Os04g49748
Os.20292.1.S1_s_at--1109--9571Chr04:29443105..29443129 (25 bp)
TCTTCCTCGGCGACCGGATGGACGG
LOC_Os04g49748
Os.20292.1.S1_s_at--1023--1911Chr04:29443126..29443150 (25 bp)
ACGGTGCCAAAGTGATAGCCATGCT
LOC_Os04g49748
Os.20292.1.S1_s_at--326--311Chr04:29443140..29443164 (25 bp)
ATAGCCATGCTCATTGGCATCTGGG
LOC_Os04g49748
Os.20292.1.S1_s_at--579--6551Chr04:29443165..29443189 (25 bp)
GATTCTTGTCCTACGTTTACCAGCA
LOC_Os04g49748
Os.20292.1.S1_s_at--852--5951Chr04:29443208..29443232 (25 bp)
GAGCAAGAACACAGCTGGGTCAGCT
LOC_Os04g49748
Os.20292.1.S1_s_at--624--7691Chr04:29443224..29443248 (25 bp)
GGGTCAGCTGACGTCACACAAACTT
LOC_Os04g49748
Target Sequence 
TGATGCAGCTCACGTTCGACACGGTGCTCAGGAGCAACGCGGCACACGCCGTGCTGGAGCTGCAGCTCTGGAGCAACGCC
GCCGCGTCGTGCGTGTCGGTGGCCGGGCTGTTCATCTCCGGCGAGTGGAGCTCCCTGACGGCGGAGATGGACGGGTACAA
GAAGGGCGAGGTGGCCTACGGGATGACGCTGGCGTGGACGGCCATCTCGTGGCAGCTCGCCACGATGGGCATGGTGGGGC
TCGTCGCGACGGTGTCGTCGCTGTTCACGAACGTGATCAGCACGGTGGGGATGCCGCTGTCGCCGATCATGGCGGTGATC
TTCCTCGGCGACCGGATGGACGGTGCCAAAGTGATAGCCATGCTCATTGGCATCTGGGGATTCTTGTCCTACGTTTACCA
GCACTACCTCGATGACGCCAAGAGCAAGAACACAGCTGGGTCAGCTGACGTCACACAAACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20292.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis