Browse Element(s) Details


Os.55410.1.S1_at

Description gb:AK108032.1
DB_XREF= gi:32993241
TID=Os.55410.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55410 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-137-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-137-B11, full insert sequence.
FL= gb:AK108032.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4979011/11retrotransposon protein, putative, Ty1-copia subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49739Os.25086.1.A1_at11/114+29439612..29441489purine permease family protein, putative, expressed
LOC_Os04g49748Os.20292.1.S1_s_at11/114+29441895..29443371purine permease family protein, putative, expressed
LOC_Os04g49748Os.20292.1.S1_at11/114+29441895..29443371purine permease family protein, putative, expressed
LOC_Os04g49748OsAffx.9915.1.S1_x_at1/114+29441895..29443371purine permease family protein, putative, expressed
LOC_Os04g49757Os.20614.3.S1_x_at11/114+29447058..29453541purine permease family protein, putative, expressed
LOC_Os04g49757Os.20614.2.S1_at11/114+29447058..29453541purine permease family protein, putative, expressed
LOC_Os04g49770OsAffx.14349.1.A1_at11/114+29454372..29455993hypothetical protein
LOC_Os04g49780NANA4+29457852..29461477transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g49790Os.55410.1.S1_at11/114+29463387..29468880retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g49800NANA4+29469388..29474853retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g49810OsAffx.21897.5.S1_x_at4/114+29475814..29478738retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g49820NANA4+29480189..29480698retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g49830NANA4+29484683..29485930hypothetical protein
LOC_Os04g49840OsAffx.24949.3.S1_x_at1/114+29490079..29493431retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55410.1.S1_at--231--9711Chr04:29464032..29464056 (25 bp)
TCAACATAAACTTTCTGCCTCCTTG
LOC_Os04g49790
Os.55410.1.S1_at--495--9611Chr04:29463907..29464016 (25 bp)
TCATCCGGCTACATCTGGATCTGAA
LOC_Os04g49790
Os.55410.1.S1_at--139--8151Chr04:29463873..29463897 (25 bp)
GGAAATCCAGTTACCACCACTGAGT
LOC_Os04g49790
Os.55410.1.S1_at--514--1971Chr04:29463855..29463879 (25 bp)
ACTGAGTGACTGGTCCATGAGCCAA
LOC_Os04g49790
Os.55410.1.S1_at--799--8911Chr04:29463838..29463862 (25 bp)
TGAGCCAAATATCCCAGTGCAAGTT
LOC_Os04g49790
Os.55410.1.S1_at--658--8251Chr04:29463785..29463809 (25 bp)
GGCAGCAGCTTTAGGCGTGCAGTAT
LOC_Os04g49790
Os.55410.1.S1_at--1063--7331Chr04:29463769..29463793 (25 bp)
GTGCAGTATCTGAAAATCGCTCTTC
LOC_Os04g49790
Os.55410.1.S1_at--356--4391Chr04:29463657..29463681 (25 bp)
GCCAAGTCCTGTTTGTTCTGGTGTA
LOC_Os04g49790
Os.55410.1.S1_at--302--4831Chr04:29463612..29463636 (25 bp)
GCTCATGTTGGTACCCATTGGTTGT
LOC_Os04g49790
Os.55410.1.S1_at--822--7911Chr04:29463593..29463617 (25 bp)
GGTTGTTCCCACTAATTATCTGTAG
LOC_Os04g49790
Os.55410.1.S1_at--352--10831Chr04:29463485..29463509 (25 bp)
TTGTGTATGCCTAACGGTGCTGTGC
LOC_Os04g49790
Target Sequence 
TCAACATAAACTTTCTGCCTCCTTGCACACCTACGTTGACTCATCCGGCTACATCTGGATCTGAAGTCTCTATTGGAAAT
CCAGTTACCACCACTGAGTGACTGGTCCATGAGCCAAATATCCCAGTGCAAGTTAACCTGGATGTTGGTGCCAGTAATAG
CAGGCAGCAGCTTTAGGCGTGCAGTATCTGAAAATCGCTCTTCACCGAAAGAACTAGAAATTGGGAAGTCTTTTGTGATA
CCAGAAACTTGTGGGTGTTTTGGTGTGATGTAACTGTGAAGTAGGACTGTGCCAAGTCCTGTTTGTTCTGGTGTATGTCC
TGGTTGTTGTGATGGGCTCATGTTGGTACCCATTGGTTGTTCCCACTAATTATCTGTAGGTTTGTTGAGCAGTACTAATT
GGTACCAGCTGATGAGGTAGTATATTTTGTGTAGTCGTTATCAGCTGATGAAGTTGTATATTTTGTGTATGCCTAACGGT
GCTGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55410.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis