Browse Element(s) Details


Os.20294.1.S1_at

Description gb:AK065459.1
DB_XREF= gi:32975477
TID=Os.20294.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.20294 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013025C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013025C01, full insert sequence.
FL= gb:AK065459.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1055011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g10510Os.53196.1.S1_at10/1112+5567824..5572417expressed protein
LOC_Os12g10520Os.48782.1.S1_at11/1112+5568630..5572009Agamous-like MADS box protein AGL12, putative, expressed
LOC_Os12g10530NANA12+5576941..5577543hypothetical protein
LOC_Os12g10540Os.2345.2.S1_a_at10/1112+5583729..5589271Floral homeotic protein AGAMOUS, putative, expressed
LOC_Os12g10550Os.20294.1.S1_at11/1112+5595768..5597853transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g10560Os.9377.1.S1_at11/1112+5601182..5605132Clathrin coat assembly protein AP17, putative, expressed
LOC_Os12g10570OsAffx.30475.5.S1_x_at11/1112+5611052..5612326ATP synthase beta chain, putative
LOC_Os12g10580OsAffx.26050.2.S2_x_at11/1112+5613126..5617041Ribulose bisphosphate carboxylase large chain precursor, putative
LOC_Os12g10580OsAffx.26050.37.S1_s_at11/1112+5613126..5617041Ribulose bisphosphate carboxylase large chain precursor, putative
LOC_Os12g10580OsAffx.32219.1.S1_x_at9/1112+5613126..5617041Ribulose bisphosphate carboxylase large chain precursor, putative
LOC_Os12g10580OsAffx.32220.1.S1_s_at9/1112+5613126..5617041Ribulose bisphosphate carboxylase large chain precursor, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20294.1.S1_at--947--6171Chr12:5597318..5597342 (25 bp)
GAGGAGTCTCCCTTGAATCGGAACA
LOC_Os12g10550
Os.20294.1.S1_at--345--3211Chr12:5597341..5597365 (25 bp)
CAAGAAAAGACCTCGCCATGCTAAT
LOC_Os12g10550
Os.20294.1.S1_at--1059--931Chr12:5597390..5597414 (25 bp)
AGGACTGAAATTGCTTTGCTCATGC
LOC_Os12g10550
Os.20294.1.S1_at--769--1491Chr12:5597452..5597476 (25 bp)
AGCACAGGCCACTTTTGAGAATTTC
LOC_Os12g10550
Os.20294.1.S1_at--1060--8871Chr12:5597467..5597491 (25 bp)
TGAGAATTTCACCTCCCTTGTTGGC
LOC_Os12g10550
Os.20294.1.S1_at--663--10791Chr12:5597484..5597508 (25 bp)
TTGTTGGCTCTCTAGGATCCAGCAT
LOC_Os12g10550
Os.20294.1.S1_at--1065--10551Chr12:5597612..5597636 (25 bp)
TTCTTGACTCTGAGTACCGCTGAGG
LOC_Os12g10550
Os.20294.1.S1_at--382--3111Chr12:5597689..5597713 (25 bp)
AATATGATCGCGGAGCTTCCTGACA
LOC_Os12g10550
Os.20294.1.S1_at--952--8951Chr12:5597709..5597733 (25 bp)
TGACATCGTTTCACTTGGCTCTTGT
LOC_Os12g10550
Os.20294.1.S1_at--1080--8311Chr12:5597725..5597749 (25 bp)
GGCTCTTGTTGCCTTAGGTATTCAA
LOC_Os12g10550
Os.20294.1.S1_at--82--3231Chr12:5597801..5597825 (25 bp)
CAAGTGTGATCGTCAACCTGTGGGT
LOC_Os12g10550
Target Sequence 
GAGGAGTCTCCCTTGAATCGGAACAAGAAAAGACCTCGCCATGCTAATAATGCTAACAAGAACAAGAGTAGTAGGACTGA
AATTGCTTTGCTCATGCAAGCTCAATTGAAGGGTATGGCAGATTTGGCCGAGAAAGCACAGGCCACTTTTGAGAATTTCA
CCTCCCTTGTTGGCTCTCTAGGATCCAGCATTCAGTATGTTATGACATTGGTTCAAGAATGTGNAGCACGGAGTGNAAGC
GACGAGCATTTCATTGCAACTGAGTTGTTTGTCAGTAGAGAACAAAGAGAAATGTTCTTGACTCTGAGTACCGCTGAGGA
GCGTCTAGAATGGCTTAGAAGAAAGTATAAAGCTAAGTATGGTGCTTAAGAAATATGATCGCGGAGCTTCCTGACATCGT
TTCACTTGGCTCTTGTTGCCTTAGGTATTCAAGACTATTTTTCTTTTCTTTTGTATCGGATGCTAGCATGTATTAGATCC
TGACAAGTGTGATCGTCAACCTGTGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20294.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis