Browse Element(s) Details


Os.20319.1.S1_at

Description gb:AK062442.1
DB_XREF= gi:32972460
TID=Os.20319.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.20319 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-103-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-103-B01, full insert sequence.
FL= gb:AK062442.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0518011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05130Os.52376.1.S1_at11/1111+2243564..2251633PHD-finger family protein, expressed
LOC_Os11g05140OsAffx.18679.1.S1_at11/1111+2253062..2257005expressed protein
LOC_Os11g05140Os.10529.1.S1_s_at11/1111+2253062..2257005expressed protein
LOC_Os11g05150NANA11+2260356..2261258hydroxyproline-rich glycoprotein family protein, putative
LOC_Os11g05160Os.47918.1.S1_at11/1111+2266868..2269937expressed protein
LOC_Os11g05170OsAffx.18681.1.S1_s_at11/1111+2272259..2272979expressed protein
LOC_Os11g05180Os.24492.1.S1_at11/1111+2274583..2277474expressed protein
LOC_Os11g05180Os.20319.1.S1_at11/1111+2274583..2277474expressed protein
LOC_Os11g05190Os.1307.1.S1_a_at11/1111+2287185..2288453Phytosulfokines 2 precursor, putative, expressed
LOC_Os11g05200OsAffx.30824.1.S1_at11/1111+2293555..2294286Zinc finger, C3HC4 type family protein
LOC_Os11g05210OsAffx.24267.1.S1_at1/1111+2295691..2302619retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20319.1.S1_at--312--5971Chr11:2274821..2275023 (25 bp)
GAGAAGCTCGAGGTGCGTTCAGTTT
LOC_Os11g05180
Os.20319.1.S1_at--938--4431Chr11:2275046..2275070 (25 bp)
GCCATCAGTTTGCATCCTGGTGCTT
LOC_Os11g05180
Os.20319.1.S1_at--578--10731Chr11:2275055..2275079 (25 bp)
TTGCATCCTGGTGCTTCCATTGAAC
LOC_Os11g05180
Os.20319.1.S1_at--751--731Chr11:2275092..2275116 (25 bp)
ATGTTTTCGCCAATTGTGGATGTAA
LOC_Os11g05180
Os.20319.1.S1_at--202--7071Chr11:2275113..2275137 (25 bp)
GTAATTCCATTTTCAATGTCAGTGA
LOC_Os11g05180
Os.20319.1.S1_at--23--771Chr11:2275128..2275152 (25 bp)
ATGTCAGTGAGTTAGCTATATGCTT
LOC_Os11g05180
Os.20319.1.S1_at--701--4031Chr11:2275287..2275311 (25 bp)
CGTTTCGATGGTGGTGAGTAAATTT
LOC_Os11g05180
Os.20319.1.S1_at--686--211Chr11:2275308..2275332 (25 bp)
ATTTGATCATTGGACTCTTTGGTAC
LOC_Os11g05180
Os.20319.1.S1_at--166--5711Chr11:2275320..2275344 (25 bp)
GACTCTTTGGTACTGAGGCAGCTGA
LOC_Os11g05180
Os.20319.1.S1_at--967--6191Chr11:2275334..2275358 (25 bp)
GAGGCAGCTGATTGTATCACTTACA
LOC_Os11g05180
Os.20319.1.S1_at--377--5291Chr11:2275371..2275395 (25 bp)
GAATGGATTTTAACGACCAATATAT
LOC_Os11g05180
Target Sequence 
GAGAAGCTCGAGGTGCGTTCAGTTTGGAAACCTCTCTGAAGATCCATGCCATCAGTTTGCATCCTGGTGCTTCCATTGAA
CACCAACTTAGTTATGTTTTCGCCAATTGTGGATGTAATTCCATTTTCAATGTCAGTGAGTTAGCTATATGCTTGATAGG
GTAGGTATGTCAAATTTATAGTTTAAGTAATTCATTTTCTATTGATTGCTCTTTCACAGTAAAGAGTTGCGAGCCAGAGT
TTCTGATATCTTCTTGAACTTGTCTTTAAAAGCTATCGACATATCGGGCGTTTCGATGGTGGTGAGTAAATTTGATCATT
GGACTCTTTGGTACTGAGGCAGCTGATTGTATCACTTACATTTAATATCTGAGAATGGATTTTAACGACCAATATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20319.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis