Browse Element(s) Details


OsAffx.30824.1.S1_at

Description tigr:9639.m00436
TID=OsAffx.30824.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to BT004591 At1g14200
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0520011/11Zinc finger, C3HC4 type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05160Os.47918.1.S1_at11/1111+2266868..2269937expressed protein
LOC_Os11g05170OsAffx.18681.1.S1_s_at11/1111+2272259..2272979expressed protein
LOC_Os11g05180Os.24492.1.S1_at11/1111+2274583..2277474expressed protein
LOC_Os11g05180Os.20319.1.S1_at11/1111+2274583..2277474expressed protein
LOC_Os11g05190Os.1307.1.S1_a_at11/1111+2287185..2288453Phytosulfokines 2 precursor, putative, expressed
LOC_Os11g05200OsAffx.30824.1.S1_at11/1111+2293555..2294286Zinc finger, C3HC4 type family protein
LOC_Os11g05210OsAffx.24267.1.S1_at1/1111+2295691..2302619retrotransposon protein, putative, unclassified
LOC_Os11g05220Os.14919.1.S1_at5/1111+2306396..2312375transposon protein, putative, Mutator sub-class
LOC_Os11g05220OsAffx.29313.1.S1_at1/1111+2306396..2312375transposon protein, putative, Mutator sub-class
LOC_Os11g05220Os.56216.1.S1_at1/1111+2306396..2312375transposon protein, putative, Mutator sub-class
LOC_Os11g05230OsAffx.30825.1.S1_at11/1111+2314669..2315574Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g05240OsAffx.30826.1.S1_at11/1111+2317594..2319117PAN domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30824.1.S1_at--700--4011Chr11:2293760..2293784 (25 bp)
CGTCGCTCTGGGACGATGAGTTCGA
LOC_Os11g05200
OsAffx.30824.1.S1_at--1019--4491Chr11:2293923..2293947 (25 bp)
GCCGATCGACGATGGCGACTTCGGC
LOC_Os11g05200
OsAffx.30824.1.S1_at--415--7212Chr11:2293948..2293972 (25 bp)
GTCGTCTTCTTGACAGGCGGCGCCC
LOC_Os11g05200
OsAffx.30824.1.S1_at--422--8471Chr11:2294003..2294027 (25 bp)
TGGCGCCGGCGGATACCAGCTGCCT
LOC_Os11g05200
OsAffx.30824.1.S1_at--4--3971Chr11:2294012..2294036 (25 bp)
CGGATACCAGCTGCCTCGGGAAGAG
LOC_Os11g05200
OsAffx.30824.1.S1_at--366--2771Chr11:2294032..2294056 (25 bp)
AAGAGCAAGTACGAGGAACCGCGCG
LOC_Os11g05200
OsAffx.30824.1.S1_at--516--1611Chr11:2294135..2294159 (25 bp)
AGCTGAGCACGATCCCGTGCGCGCA
LOC_Os11g05200
OsAffx.30824.1.S1_at--254--551Chr11:2294146..2294170 (25 bp)
ATCCCGTGCGCGCACAGGCATCGGT
LOC_Os11g05200
OsAffx.30824.1.S1_at--513--3491Chr11:2294160..2294184 (25 bp)
CAGGCATCGGTTCCACGACAAGTGC
LOC_Os11g05200
OsAffx.30824.1.S1_at--1003--491Chr11:2294165..2294189 (25 bp)
ATCGGTTCCACGACAAGTGCCTCGC
LOC_Os11g05200
OsAffx.30824.1.S1_at--504--7491Chr11:2294193..2294217 (25 bp)
GTGGTTGAAGCGAAGCCGCTCCTGC
LOC_Os11g05200
Target Sequence 
CGTCGCTCTGGGACGATGAGTTCGAGCTCACCGGCGGCGCCGACGCCGACCGCTTCACCCCGCCCGGCCCGCGCCTCCCG
CGCCCGCCCACCCACCACCTCAACATCTTCTCTTCCCGGCTGCAGCGCCTCGCGTCCACCCGCGCGCCGCCGCCGATGCC
GCCGCCGATCGACGATGGCGACTTCGGCGTCGTCTTCTTGACAGGCGGCGCCCGGCGCCATGTCGCCGTGGCCGCCGCCA
GGGTGGCGCCGGCGGATACCAGCTGCCTCGGGAAGAGCAAGTACGAGGAACCGCGCGGCGGCGGCGAGACGGCGATGGGC
GGCGCGGATTCGACGGGGTGCGTGATCTGCATCGCGGAGTTCGAGGTGGGCGACGAGCTGAGCACGATCCCGTGCGCGCA
CAGGCATCGGTTCCACGACAAGTGCCTCGCCGAGTGGTTGAAGCGAAGCCGCTCCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30824.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis