Browse Element(s) Details


Os.20352.1.S1_at

Description gb:AK104955.1
DB_XREF= gi:32990164
TID=Os.20352.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.20352 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-047-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-047-A03, full insert sequence.
FL= gb:AK068856.1 gb:AK104955.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4008011/11heme oxygenase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g40060Os.14852.1.A1_at10/116+23842286..23846139glycosyltransferase family 14 protein, putative, expressed
LOC_Os06g40070OsAffx.5067.1.S1_at10/116+23846664..23849966oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os06g40080Os.20352.1.S1_at11/116+23852775..23857026heme oxygenase 1, putative, expressed
LOC_Os06g40090OsAffx.15855.1.S1_at11/116+23862816..23863503VQ motif family protein, expressed
LOC_Os06g40110Os.6079.1.S1_at11/116+23872485..23873728RNA polymerase Rpc34 subunit family protein, expressed
LOC_Os06g40120Os.11840.1.S1_at11/116+23874414..23878968IDS4, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006788biological_processheme oxidation
GO:0010019biological_processchloroplast-nucleus signaling pathway
GO:0010024biological_processphytochromobilin biosynthesis
GO:0009507cellular_componentchloroplast
GO:0004392molecular_functionheme oxygenase (decyclizing) activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20352.1.S1_at--916--5491Chr06:23853931..23853955 (25 bp)
GAACAGGGTCACACAATTCCAGAAC
LOC_Os06g40080
Os.20352.1.S1_at--220--8251Chr06:23853895..23853919 (25 bp)
GGCACTACATATGCTTCCTATCTGG
LOC_Os06g40080
Os.20352.1.S1_at--673--2311Chr06:23853857..23853881 (25 bp)
AAAGGACTCCCAAGCTTTTATCTGC
LOC_Os06g40080
Os.20352.1.S1_at--493--10211Chr06:23853817..23853841 (25 bp)
TATTTTGCTCATACGGCTGGAGGCC
LOC_Os06g40080
Os.20352.1.S1_at--659--1591Chr06:23853173..23853197 (25 bp)
AGCTGCTGCAGAATGTCCGCAACAA
LOC_Os06g40080
Os.20352.1.S1_at--603--9791Chr06:23853031..23853169 (25 bp)
TAACGAAGTCGCCTCTAGCTGGACC
LOC_Os06g40080
Os.20352.1.S1_at--673--5331Chr06:23852971..23852995 (25 bp)
GAAGTCGTTCTCGTATTCTGGAGAT
LOC_Os06g40080
Os.20352.1.S1_at--433--9291Chr06:23852942..23852966 (25 bp)
TCCGTCACATATTCACCTAAGCTTA
LOC_Os06g40080
Os.20352.1.S1_at--118--1931Chr06:23852910..23852934 (25 bp)
ACGGTGTCTGCTATCTAGTCTTGAT
LOC_Os06g40080
Os.20352.1.S1_at--232--3331Chr06:23852835..23852859 (25 bp)
CACTGGGCAGAGGTCATTTACTTAC
LOC_Os06g40080
Os.20352.1.S1_at--22--10711Chr06:23852796..23852820 (25 bp)
TTGCCTCCCATCAAATTGCCAAATT
LOC_Os06g40080
Target Sequence 
GAACAGGGTCACACAATTCCAGAACCATCTGCTCCCGGCACTACATATGCTTCCTATCTGGAAGAGCTGGCTGAAAAGGA
CTCCCAAGCTTTTATCTGCCATTTCTATAATGTGTATTTTGCTCATACGGCTGGAGGCCGAATGATTGGGAAGAAGGTCT
CTGAGAATATTCTGAACAAGAAGGAGCTGGAGTTCTACAAATGGGAGGGCAATCTGTCCCAGCTGCTGCAGAATGTCCGC
AACAAGCTTAACGAAGTCGCCTCTAGCTGGACCCGGGAGGAGAAGGACCATTGCCTGGATGAAACGGAGAAGTCGTTCTC
GTATTCTGGAGATCTCCTCCGTCACATATTCACCTAAGCTTAATTGATCACGGTGTCTGCTATCTAGTCTTGATAAACGC
TGTAAATACTAAAGTTCACGTCAGTCAGACAGACTGTTACTGGACACTGGGCAGAGGTCATTTACTTACTCAACCAGTTG
GCCTTGCCTCCCATCAAATTGCCAAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20352.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis