Browse Element(s) Details


Os.20457.1.S1_at

Description gb:CB627059
DB_XREF= gi:29622048
DB_XREF=OSIIEb01L21.r
CLONE=OSIIEb01L21
TID=Os.20457.1
CNT=6
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.20457 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_174027.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4817011/11Isoamylase N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48140OsAffx.25619.1.S1_at11/113+27323367..27336685unconventional myosin heavy chain, putative, expressed
LOC_Os03g48140Os.10915.1.S1_at11/113+27323367..27336685unconventional myosin heavy chain, putative, expressed
LOC_Os03g48150Os.15951.1.S1_at2/113+27344213..27346915expressed protein
LOC_Os03g48150OsAffx.5018.1.S1_at1/113+27344213..27346915expressed protein
LOC_Os03g48160OsAffx.13401.1.S1_at10/113+27352532..27355617expressed protein
LOC_Os03g48170Os.20457.1.S1_at11/113+27357503..27362415Isoamylase N-terminal domain containing protein, expressed
LOC_Os03g48170OsAffx.25620.1.S1_x_at11/113+27357503..27362415Isoamylase N-terminal domain containing protein, expressed
LOC_Os03g48170OsAffx.25620.1.S1_at10/113+27357503..27362415Isoamylase N-terminal domain containing protein, expressed
LOC_Os03g48180Os.11525.1.S1_s_at11/113+27362672..27367943POT family protein, expressed
LOC_Os03g48190Os.52470.1.S1_at11/113+27381017..27385764expressed protein
LOC_Os03g48190OsAffx.13402.1.S1_at11/113+27381017..27385764expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20457.1.S1_at--1155--1951Chr03:27361983..27362007 (25 bp)
ACTGTCACTTGACTTGAAGCTCCAT
LOC_Os03g48170
Os.20457.1.S1_at--336--5411Chr03:27361998..27362022 (25 bp)
GAAGCTCCATTTGTCAATCCTGGTA
LOC_Os03g48170
Os.20457.1.S1_at--642--2111Chr03:27362057..27362081 (25 bp)
ACATGATTAGGCCAATCCATCCAGA
LOC_Os03g48170
Os.20457.1.S1_at--1127--1111Chr03:27362100..27362124 (25 bp)
AGTGAGCTGGTTAGCTCTGTTCCAC
LOC_Os03g48170
Os.20457.1.S1_at--100--8811Chr03:27362117..27362141 (25 bp)
TGTTCCACCCTGTAATTATCTGCTT
LOC_Os03g48170
Os.20457.1.S1_at--678--3131Chr03:27362130..27362154 (25 bp)
AATTATCTGCTTCGCCTTAAGTCGT
LOC_Os03g48170
Os.20457.1.S1_at--81--9411Chr03:27362151..27362175 (25 bp)
TCGTCGTTCTTTTTCTTTGGTAGAG
LOC_Os03g48170
Os.20457.1.S1_at--480--9771Chr03:27362197..27362221 (25 bp)
TAAGGGTGTTGTCAGAATGCCTCAC
LOC_Os03g48170
Os.20457.1.S1_at--1018--5251Chr03:27362211..27362235 (25 bp)
GAATGCCTCACCCTGTTAGATAGGA
LOC_Os03g48170
Os.20457.1.S1_at--169--10831Chr03:27362247..27362271 (25 bp)
TTGTGTATTCTTTTCTTCCCCGTCT
LOC_Os03g48170
Os.20457.1.S1_at--37--7751Chr03:27362309..27362333 (25 bp)
GGTGTCTGGTTGTACACCTTCATGG
LOC_Os03g48170
Target Sequence 
ACTGTCACTTGACTTGAAGCTCCATTTGTCAATCCTGGTAGCATTTTTGTAGATTGTTATCTAGATCTTTATCAACATGA
TTAGGCCAATCCATCCAGAATGGAAACAAAAAAAATGAGTGAGCTGGTTAGCTCTGTTCCACCCTGTAATTATCTGCTTC
GCCTTAAGTCGTCGTTCTTTTTCTTTGGTAGAGATTCTTACAATTTAAACAGTGTAAGGGTGTTGTCAGAATGCCTCACC
CTGTTAGATAGGAGAAGAGAATAGTTGTGTATTCTTTTCTTCCCCGTCTTTTGCCCGGAGAAGTATAGTTGTGTGATGGG
TATCCAGGTGTCTGGTTGTACACCTTCATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20457.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis