Browse Element(s) Details


Os.20517.1.S1_at

Description gb:AU222580
DB_XREF= gi:15008192
DB_XREF=AU222580
CLONE=E1495
TID=Os.20517.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.20517 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs AU029725(E31395),C74474(E31395)~similar to Arabidopsis thaliana chromosome 5, At5g45530~unknown protein (P0585H11.25), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0184011/11expressed protein
LOC_Os07g015203/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01820Os.12750.1.S1_x_at11/117+469473..475954MADS2, putative, expressed
LOC_Os07g01820Os.12750.2.S1_s_at11/117+469473..475954MADS2, putative, expressed
LOC_Os07g01820Os.12750.1.S1_a_at11/117+469473..475954MADS2, putative, expressed
LOC_Os07g01820Os.57543.1.S1_at2/117+469473..475954MADS2, putative, expressed
LOC_Os07g01830OsAffx.16036.1.S1_x_at9/117+489913..490657hypothetical protein
LOC_Os07g01840Os.20517.1.S1_at11/117+494780..497280expressed protein
LOC_Os07g01850Os.21876.1.S1_at11/117+504590..509557NLI interacting factor-like phosphatase family protein, expressed
LOC_Os07g01850OsAffx.5177.1.S1_at8/117+504590..509557NLI interacting factor-like phosphatase family protein, expressed
LOC_Os07g01860Os.38052.1.S1_at11/117+514165..520238expressed protein
LOC_Os07g01870Os.4714.1.S1_at11/117+521662..52406460S ribosomal protein L13a-2, putative, expressed
LOC_Os07g01870Os.4714.2.S1_x_at10/117+521662..52406460S ribosomal protein L13a-2, putative, expressed
LOC_Os07g01870Os.4714.2.S1_at7/117+521662..52406460S ribosomal protein L13a-2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20517.1.S1_at--263--9972Chr07:327013..327037 (25 bp)
TACCTCCTCGTCAGGCAACCGGAGA
LOC_Os07g01520
Os.20517.1.S1_at--646--4132Chr07:327100..327124 (25 bp)
CGCTTCTTCAAGTCGGCGGAGGCGT
LOC_Os07g01520
Os.20517.1.S1_at--814--9072Chr07:327158..327182 (25 bp)
TGCTTTCCGTCAACACGTCCAAGAA
LOC_Os07g01520
Os.20517.1.S1_at--488--8071Chr07:495005..495029 (25 bp)
GGAGCACACACGTGCGCCAGCTCAG
LOC_Os07g01840
Os.20517.1.S1_at--912--4611Chr07:494972..494996 (25 bp)
GCGAGCTCATCACCATGGCATGGTT
LOC_Os07g01840
Os.20517.1.S1_at--796--391Chr07:494964..494988 (25 bp)
ATCACCATGGCATGGTTCCTCATGG
LOC_Os07g01840
Os.20517.1.S1_at--1162--10091Chr07:494927..494951 (25 bp)
TAGGCGACGTGTATCGGATCGGCGA
LOC_Os07g01840
Os.20517.1.S1_at--868--1611Chr07:494903..494927 (25 bp)
AGCTGGCCGGTGACTCCAAGGCCAA
LOC_Os07g01840
Os.20517.1.S1_at--724--4391Chr07:494883..494907 (25 bp)
GCCAAGCTCATCATCCATGATCAAT
LOC_Os07g01840
Os.20517.1.S1_at--1000--4431Chr07:494849..494873 (25 bp)
GCCATACTCAATAGCTCATCGACGT
LOC_Os07g01840
Os.20517.1.S1_at--231--531Chr07:494832..494856 (25 bp)
ATCGACGTCCAATCTTCACCAAGAA
LOC_Os07g01840
Target Sequence 
TACCTCCTCGTCAGGCAACCGGAGATGCTGTNGGCCACCGCNGGCATCGGCNTACTCCGCTACCGGGACANGTGCGCCGA
GGCGCGCCGCTTCTTCAAGTCGGCGGAGGCGTGGGACCCCAACCACGACGACGCCCGCCGGATGCTGCTTTCCGTCAACA
CGTCCAAGAAGCCGGCCGATGTGAAGGGCGACCGGAGCAAGTCGGTGCTGTTCGACGCCTGCATCCTGGCCAAGGTGCTC
CGGGAGCTGGACGACGACACCATGTGGAGGGTGGTGGCCGGAGTGTGGAGGGAGATGCTGACTTNACGCGGCCGGCAAGT
GCCAGGGGAGCACACACGTGCGCCAGCTCAGCCGTGGCGGCGAGCTCATCACCATGGCATGGTTCCTCATGGCGCACATG
GGGATAGGCGACGTGTATCGGATCGGCGAGCTGGCCGGTGACTCCAAGGCCAAGCTCATCATCCATGATCAATAGCTAGC
TAGCCATACTCAATAGCTCATCGACGTCCAATCTTCACCAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20517.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis