Browse Element(s) Details


Os.20589.1.S1_at

Description gb:BQ906060
DB_XREF= gi:22304838
DB_XREF=L011A09
CLONE=L011A09
TID=Os.20589.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.20589 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cytochrome P450 (P0518F01.24), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g418007/11Cytochrome P450 72A1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41770OsAffx.21394.1.S1_at11/111+23966834..23969695Leucine Rich Repeat family protein, expressed
LOC_Os01g41780Os.40423.2.S1_x_at11/111+23975277..23978326Leucine Rich Repeat family protein, expressed
LOC_Os01g41780Os.40423.1.S1_at10/111+23975277..23978326Leucine Rich Repeat family protein, expressed
LOC_Os01g41790OsAffx.21393.1.S1_at11/111+23982858..23985164hypothetical protein
LOC_Os01g41800Os.20589.1.S1_at7/111+23989911..23991292Cytochrome P450 72A1, putative, expressed
LOC_Os01g41800Os.26891.1.A1_x_at1/111+23989911..23991292Cytochrome P450 72A1, putative, expressed
LOC_Os01g41810Os.22681.1.S1_at10/111+24000019..24002808Cytochrome P450 family protein, expressed
LOC_Os01g41810Os.26891.1.A1_x_at2/111+24000019..24002808Cytochrome P450 family protein, expressed
LOC_Os01g41820Os.26891.1.A1_x_at10/111+24009122..24012243Cytochrome P450 family protein, expressed
LOC_Os01g41834OsAffx.23626.1.S1_at11/111+24015137..24018879Chalcone and stilbene synthases, N-terminal domain containing protein
LOC_Os01g41834OsAffx.23626.2.S1_s_at11/111+24015137..24018879Chalcone and stilbene synthases, N-terminal domain containing protein
LOC_Os01g41834OsAffx.23626.1.S1_x_at11/111+24015137..24018879Chalcone and stilbene synthases, N-terminal domain containing protein
LOC_Os01g41834OsAffx.23626.2.S1_at10/111+24015137..24018879Chalcone and stilbene synthases, N-terminal domain containing protein
LOC_Os01g41834OsAffx.15908.2.S1_x_at1/111+24015137..24018879Chalcone and stilbene synthases, N-terminal domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20589.1.S1_at--467--6051Chr01:23990448..23990472 (25 bp)
GAGATAGGAGGAGTCACTTACCCAG
LOC_Os01g41800
Os.20589.1.S1_at--791--6091Chr01:23990438..23990462 (25 bp)
GAGTCACTTACCCAGCTGGTGTTAG
LOC_Os01g41800
Os.20589.1.S1_at--88--4731Chr01:23990424..23990448 (25 bp)
GCTGGTGTTAGCATTAAAATCCCCG
LOC_Os01g41800
Os.20589.1.S1_at--58--11Chr01:23990411..23990435 (25 bp)
TTAAAATCCCCGTGTTGTTCATCCA
LOC_Os01g41800
Os.20589.1.S1_at--114--9171Chr01:23990167..23990191 (25 bp)
TGCGCCGCATACTATGGTAACTCTG
LOC_Os01g41800
Os.20589.1.S1_at--813--7051Chr01:23990151..23990175 (25 bp)
GTAACTCTGCATCCAATGCACGGTG
LOC_Os01g41800
Os.20589.1.S1_at--530--2011NONE
ACTCTTGGTTGTGACGTTGTGACTA
NONE
Os.20589.1.S1_at--445--5751NONE
GACGTTGTGACTATTTGTACCTTTG
NONE
Os.20589.1.S1_at--506--7371Chr01:23990051..23990550 (25 bp)
GTGACTATTTGTACCTTTGTAATAA
LOC_Os01g41800
Os.20589.1.S1_at--162--10351NONE
TTAGTATACTAGCAAAGTCCCCGTG
NONE
Os.20589.1.S1_at--464--331NONE
ATACTAGCAAAGTCCCCGTGCGTTG
NONE
Target Sequence 
GAGATAGGAGGAGTCACTTACCCAGCTGGTGTTAGCATTAAAATCCCCGTGTTGTTCATCCACCATGATCNGGACNCNTG
GGGAAGTGATGTGCATGAGTTCAANCCTGAGAGGTTCTCTGAGGGGATCTCTAAGGCGTCTAAGGATCCGGGNGCATTCC
TCCCNTTCGGTTGGGGGCCACGAATCTGCATCGGCCNAAACTTCGCGCTGCTTGAGNCCAAGATGGCATTGTGCCTGATT
CTTCAACGCTTGGAGTTTGAGCTTGCGCCATCNTATACTCATGCGCCGCATACTATGGTAACTCTGCATCCAATGCACGG
TGCACAGATNAAAGTTAGAGCTATATGATCATTTCAGATTATAGCGTGTTTTATTAGTACAACTCTTGGTTGTGACGTTG
TGACTATTTGTACCTTTGTAATAAAATTGGGATAAGGGATATCTATATTATTAGTATACTAGCAAAGTCCCCGTGCGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20589.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis