Browse Element(s) Details


Os.20605.1.S1_at

Description gb:AK067573.1
DB_XREF= gi:32977591
TID=Os.20605.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20605 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-047-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013108E08, full insert sequence.
FL= gb:AK067573.1 gb:AK104913.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4980010/11Ubiquitin interaction motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g49760Os.12838.1.S1_at11/116+30104877..30105835pectinesterase inhibitor domain containing protein, expressed
LOC_Os06g49770Os.47906.1.A1_at11/116+30112942..30114504Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os06g49780Os.14276.1.S1_at11/116+30116757..30117752expressed protein
LOC_Os06g49790Os.8460.1.S1_at11/116+30121868..30127016JD1, putative, expressed
LOC_Os06g49800Os.20605.1.S1_at10/116+30127201..30133099Ubiquitin interaction motif family protein, expressed
LOC_Os06g49810Os.18081.1.S1_at11/116+30135599..30140160Glycosyltransferase QUASIMODO1, putative, expressed
LOC_Os06g49820NANA6+30150745..30154077transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20605.1.S1_at--1087--8291Chr06:30129233..30129338 (25 bp)
GGCTATGACAAGTACCGCTGACTAT
LOC_Os06g49800
Os.20605.1.S1_at--951--4211Chr06:30129219..30129324 (25 bp)
CCGCTGACTATCTTGCTCAATTTGA
LOC_Os06g49800
Os.20605.1.S1_at--616--211Chr06:30129200..30129224 (25 bp)
ATTTGACAATACTACCCTGCAGCAC
LOC_Os06g49800
Os.20605.1.S1_at--539--5111NONE
GCACTCGTCTGGAAACTCTGATCTA
NONE
Os.20605.1.S1_at--1119--5891Chr06:30128380..30128404 (25 bp)
GAGCTAGCTATAGCACTTCAACAAC
LOC_Os06g49800
Os.20605.1.S1_at--794--3271Chr06:30128362..30128386 (25 bp)
CAACAACAGGAGTTTGAGCGGCAAC
LOC_Os06g49800
Os.20605.1.S1_at--765--1711Chr06:30128325..30128349 (25 bp)
ACCAGTCGTCAACACAGCAGCAGGA
LOC_Os06g49800
Os.20605.1.S1_at--383--5051Chr06:30128279..30128303 (25 bp)
GCAGACACCCAATCAATCACATGGC
LOC_Os06g49800
Os.20605.1.S1_at--448--3311Chr06:30128255..30128279 (25 bp)
CACAGGTCGGCCAGGATTAGTTGTT
LOC_Os06g49800
Os.20605.1.S1_at--1158--4711Chr06:30127226..30127250 (25 bp)
GCTGTCAAATGATAGCCCTCCAACG
LOC_Os06g49800
Os.20605.1.S1_at--960--291Chr06:30127215..30127239 (25 bp)
ATAGCCCTCCAACGCGATGTGATTG
LOC_Os06g49800
Target Sequence 
GGCTATGACAAGTACCGCTGACTATCTTGCTCAATTTGACAATACTACCCTGCAGCACTCGTCTGGAAACTCTGATCTAG
AGCTAGCTATAGCACTTCAACAACAGGAGTTTGAGCGGCAACAACCTCAACGACACCAGTCGTCAACACAGCAGCAGGAG
CCGGTGCCCCAGCAGCAACAGCAGACACCCAATCAATCACATGGCACAGGTCGGCCAGGATTAGTTGTTGGTCCAACAAC
GGCAAGGAGGCCACCTGCTCCACAGCCGACGACGCCGAAGAAAGAGAAGTGCATCGTGATGTAAAGATACAACATATCGG
AGACGGGACAGGAGAAAGGAAAAGGGAGGGGGACAAGGAGCATCNCATAGTATACTGTAAAGAATCTTCTTGTNTACTCT
TNTTCTTTAGTGCCGCGGCATAGCAGCAGCCTGTTGTTTTTTTTAGCCACTTTTCCCAATNTTGAGCGCTCTTCATTTNG
NGTGNTTTTTTNTTCCCTGGTGTAAATANCCTTCAAAGAAGTCATAAAACGTAAACAGNNGCTGTCAAATGATAGCCCTC
CAACGCGATGTGATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20605.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis