Browse Element(s) Details


Os.20616.2.S1_x_at

Description gb:NM_193211.1
DB_XREF= gi:34913505
GEN=OJ1029_F04.4
TID=Os.20616.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.20616 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1029_F04.4 (OJ1029_F04.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) OJ1029_F04.4 (OJ1029_F04.4), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3493011/11glycosyl transferase family 48 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34890OsAffx.21285.2.S1_at11/111+19591311..19607305glycosyl transferase family 48 protein, putative
LOC_Os01g34890Os.20183.1.S1_at1/111+19591311..19607305glycosyl transferase family 48 protein, putative
LOC_Os01g34900OsAffx.27867.1.S1_s_at2/111+19608274..19609113glycosyl transferase family 48 protein, putative, expressed
LOC_Os01g34910NANA1+19611808..19613796hypothetical protein
LOC_Os01g34920Os.41043.1.S1_at10/111+19622416..19628985Beta-galactosidase precursor, putative, expressed
LOC_Os01g34930Os.20616.2.S1_x_at11/111+19630240..19632883glycosyl transferase family 48 protein, putative, expressed
LOC_Os01g34930Os.20616.2.S1_at11/111+19630240..19632883glycosyl transferase family 48 protein, putative, expressed
LOC_Os01g34930Os.20616.1.S1_at10/111+19630240..19632883glycosyl transferase family 48 protein, putative, expressed
LOC_Os01g34940OsAffx.21282.1.S1_at7/111+19651660..19652316hypothetical protein
LOC_Os01g34940OsAffx.7080.1.S1_x_at1/111+19651660..19652316hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006075biological_processbeta-1,3 glucan biosynthesis
GO:0009556biological_processmicrosporogenesis
GO:0009860biological_processpollen tube growth
GO:0010208biological_processpollen wall formation
GO:0000148cellular_component1,3-beta-glucan synthase complex
GO:0009504cellular_componentcell plate
GO:0003843molecular_function1,3-beta-glucan synthase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20616.2.S1_x_at--255--9931Chr01:19631408..19631432 (25 bp)
TACGTAGCCTGCTGTTGGAGTTCGT
LOC_Os01g34930
Os.20616.2.S1_x_at--480--7751Chr01:19631219..19631243 (25 bp)
GGTGTATGCACTATCATGGCTGGTT
LOC_Os01g34930
Os.20616.2.S1_x_at--831--291Chr01:19631194..19631218 (25 bp)
ATAGCTATAGTTCTTGTATCACTTA
LOC_Os01g34930
Os.20616.2.S1_x_at--1016--6891Chr01:19631105..19631203 (25 bp)
GTATCACTTAAGGTCGTCTCAATGG
LOC_Os01g34930
Os.20616.2.S1_x_at--1013--10771Chr01:19631050..19631074 (25 bp)
TTGTATTCCGTATCCTCAAGGGCAT
LOC_Os01g34930
Os.20616.2.S1_x_at--536--8291Chr01:19631030..19631054 (25 bp)
GGCATTGTCTTTATTGTCCTCATCA
LOC_Os01g34930
Os.20616.2.S1_x_at--100--7271Chr01:19631015..19631039 (25 bp)
GTCCTCATCAGCTTGGTGGTCATAT
LOC_Os01g34930
Os.20616.2.S1_x_at--618--3851Chr01:19630973..19630997 (25 bp)
CTGACTGTCTCTGATGTTGGTGCCA
LOC_Os01g34930
Os.20616.2.S1_x_at--1099--6871Chr01:19630948..19630972 (25 bp)
GTATTTTGGCATTCATCCCTACTGG
LOC_Os01g34930
Os.20616.2.S1_x_at--1102--91Chr01:19630920..19630940 (21 bp)
ATTCTTCAGGTAAGTGATGCACGGG
LOC_Os01g34930
Os.20616.2.S1_x_at--275--5171Chr01:19630651..19630675 (25 bp)
GCAAGATCGGGCCATGGGACTCCAT
LOC_Os01g34930
Target Sequence 
TACGTAGCCTGCTGTTGGAGTTCGTCCTCTCCCTTCGCTTCTTGATATACCAATATGGTATTGTTTATCATTTACACATA
GTGCATGGGAACAGAAGCTTCATGGTGTATGCACTATCATGGCTGGTTATAGCTATAGTTCTTGTATCACTTAAGGTCGT
CTCAATGGGGAGAGAGAAGTTTATTACCAATTTTCAACTTGTATTCCGTATCCTCAAGGGCATTGTCTTTATTGTCCTCA
TCAGCTTGGTGGTCATATTATTTGTTGTTTTCAATCTGACTGTCTCTGATGTTGGTGCCAGTATTTTGGCATTCATCCCT
ACTGGCTGGTTTATTCTTCAGGTAAGTGATGCACGGGATGTGCTCCGCAAGATCGGGCCATGGGACTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20616.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis