Browse Element(s) Details


Os.20626.1.A1_at

Description gb:CA762266
DB_XREF= gi:25806305
DB_XREF=BR060004A20A02.ab1
CLONE=BR060004A20A02.ab1
TID=Os.20626.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.20626 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g306102/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g30570OsAffx.19903.1.S1_x_at11/1112+18332434..18333588ATMRK1, putative
LOC_Os12g30570OsAffx.19903.1.S1_at11/1112+18332434..18333588ATMRK1, putative
LOC_Os12g30580OsAffx.19904.1.S1_at11/1112+18335742..18336474hypothetical protein
LOC_Os12g30590Os.54180.1.S1_at11/1112+18341141..18345184NB-ARC domain containing protein, expressed
LOC_Os12g30600Os.52564.1.S1_at8/1112+18346327..18353859retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g30610OsAffx.31946.1.S1_at10/1112+18355171..18358705expressed protein
LOC_Os12g30610Os.20626.1.A1_at2/1112+18355171..18358705expressed protein
LOC_Os12g30620OsAffx.19905.1.S1_at10/1112+18359695..18362403pentatricopeptide, putative
LOC_Os12g30630Os.47463.1.S1_x_at5/1112+18366907..18379812transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g30630Os.14491.2.S1_x_at3/1112+18366907..18379812transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g30630Os.27037.1.A1_at1/1112+18366907..18379812transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20626.1.A1_at--506--272Chr12:18357984..18358008 (25 bp)
ATAGTCATGGTGCTTTTGGTTTCGT
LOC_Os12g30610
Os.20626.1.A1_at--1013--3491Chr12:18357989..18358013 (25 bp)
CATGGTGCTTTTGGTTTCGTGTTGT
LOC_Os12g30610
Os.20626.1.A1_at--893--811Chr12:18358725..18358749 (25 bp)
ATGGATTTGTGATCAACGTTATAAT
NONE
Os.20626.1.A1_at--674--1891Chr12:18358740..18358764 (25 bp)
ACGTTATAATTTGCCAGTCTCTCCA
NONE
Os.20626.1.A1_at--12--5631Chr12:18358834..18358858 (25 bp)
GACAAAGGAAGAGTGCCATACTGCC
NONE
Os.20626.1.A1_at--657--7271Chr12:18358846..18358870 (25 bp)
GTGCCATACTGCCAAGGTTGTAGTG
NONE
Os.20626.1.A1_at--481--7911Chr12:18358861..18358885 (25 bp)
GGTTGTAGTGCCATAATGCCATTTA
NONE
Os.20626.1.A1_at--10--8651Chr12:18358902..18358926 (25 bp)
TGGGAGTACTCCCTAACTTGTATAG
NONE
Os.20626.1.A1_at--187--7011Chr12:18358907..18358931 (25 bp)
GTACTCCCTAACTTGTATAGACATC
NONE
Os.20626.1.A1_at--730--10371NONE
TTTTTTGGGTCTTTGAGTGCTGGAT
NONE
Os.20626.1.A1_at--203--7151NONE
GTCTTTGAGTGCTGGATAAATTATC
NONE
Target Sequence 
ATAGTCATGGTGCTTTTGGTTTCGTGTTGTTTNANTNNTGNNNNNNNNNNTNNNCNTNCNCNNGGTCTAAGAGTGCTACA
GGAAAGCNAAGCAACTCCAACCTNTGATGCAACGACTGAGGCTATCGATTTTNAAGAATCGGAATTCANCCCGTAGTGGA
AGTATGGGGTTTGAGCTCAATGATTANCCCTGGTTNTGGTGCAAACANACCGCCATTNGCCACACTNTGAGGGCNAATAG
ATGAAGGGACAAACAGCTGAACNATGGATTTGTGATCAACGTTATAATTTGCCAGTCTCTCCAGTCTCCAGTNTCCAGTT
CACATGTTCTTGCATGGNAAAGCATAAGAAAACTTGAACANGATGACTGAGATGACAAAGGAAGAGTGCCATACTGCCAA
GGTTGTAGTGCCATAATGCCATTTATAGATCGAAAATAATTTGGGAGTACTCCCTAACTTGTATAGACATCNATCTGACG
TGAGTAATAATNNANCNAGGGTGCAATTTTTTTTTGGGTCTTTGAGTGCTGGATAAATTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20626.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis