Browse Element(s) Details


Os.20722.2.S1_at

Description gb:AK067290.1
DB_XREF= gi:32977308
TID=Os.20722.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20722 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013100E23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013100E23, full insert sequence.
FL= gb:AK067290.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g198501/11transposase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g19850Os.50532.1.S1_at10/112+11663432..11668032transposase, putative, expressed
LOC_Os02g19850Os.20722.2.S1_at1/112+11663432..11668032transposase, putative, expressed
LOC_Os02g19860Os.50899.1.S1_at11/112+11668355..11673576Pre-mRNA splicing factor ATP-dependent RNA helicase, putative, expressed
LOC_Os02g19870NANA2+11674414..11684362retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20722.2.S1_at--67--3772Chr11:11645769..11645794 (25 bp)
CTCTTCTTTGCTTAACATGTATCTG
NONE
Os.20722.2.S1_at--518--3512Chr05:5907353..5907377 (25 bp)
CATGTATCTGTTTTGCACTTTCTGC
NONE
Os.20722.2.S1_at--199--10611Chr05:5907334..5907358 (25 bp)
TTCTGCACCATCATCCACATATTAA
NONE
Os.20722.2.S1_at--946--131Chr05:5907314..5907338 (25 bp)
ATTAACGTGCGCAGCGTGAAGCCAC
NONE
Os.20722.2.S1_at--292--2652Chr11:11645589..11645866 (25 bp)
AAGCCACGCTTGTTCTTCTAGTAAC
NONE
Os.20722.2.S1_at--221--2112Chr11:11645865..11645889 (25 bp)
ACATCCAATGGCCAATGCTATCTAG
NONE
Os.20722.2.S1_at--602--5932Chr11:11645960..11645984 (25 bp)
GAGCATGCTATCTAGTAATTCCTTG
NONE
Os.20722.2.S1_at--311--5512Chr11:11646005..11646029 (25 bp)
GAACACTTAGTCTTTACTTGGATTT
NONE
Os.20722.2.S1_at--778--8672Chr11:11646048..11646072 (25 bp)
TGTGAACACTGACTTTCGACATGGT
NONE
Os.20722.2.S1_at--8--10612Chr11:11646062..11646086 (25 bp)
TTCGACATGGTCACTACCTCAAATG
NONE
Os.20722.2.S1_at--691--292Chr11:11646097..11646121 (25 bp)
ATACCTTGCCTGATTTTTGTTTTTG
NONE
Target Sequence 
CTCTTCTTTGCTTAACATGTATCTGTTTTGCACTTTCTGCACCATCATCCACATATTAACGTGCGCAGCGTGAAGCCACG
CTTGTTCTTCTAGTAACATCCAATGGCCAATGCTATCTAGAGAATATTCATCAAGAGCAGTTAAGTATGCAAATTATTCA
GGAGTTGAATAGTTCCAAAAAGTTGGTATAGAGCATGCTATCTAGTAATTCCTTGATGACATGCACATCATTNTAGAACA
CTTAGTCTTTACTTGGATTTTGAATATTTCTGTTGAAATGTGAACACTGACTTTCGACATGGTCACTACCTCAAATGAAT
CATTAATATACCTTGCCTGATTTTTGTTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20722.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis