Browse Element(s) Details


Os.50532.1.S1_at

Description gb:AK121646.1
DB_XREF= gi:37991269
TID=Os.50532.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50532 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033058J23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033058J23, full insert sequence.
FL= gb:AK121646.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1985010/11transposase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g19850Os.50532.1.S1_at10/112+11663432..11668032transposase, putative, expressed
LOC_Os02g19850Os.20722.2.S1_at1/112+11663432..11668032transposase, putative, expressed
LOC_Os02g19860Os.50899.1.S1_at11/112+11668355..11673576Pre-mRNA splicing factor ATP-dependent RNA helicase, putative, expressed
LOC_Os02g19870NANA2+11674414..11684362retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50532.1.S1_at--1037--2811Chr02:11665389..11665413 (25 bp)
AAGTTGGCACTGCTCTTACCAGTTA
LOC_Os02g19850
Os.50532.1.S1_at--95--5331Chr02:11665335..11665359 (25 bp)
GAAGTGAATGCTATCCATACCGATT
LOC_Os02g19850
Os.50532.1.S1_at--453--9231Chr02:11665322..11665346 (25 bp)
TCCATACCGATTTTTGTGAGCTTAT
LOC_Os02g19850
Os.50532.1.S1_at--267--7391Chr02:11665307..11665331 (25 bp)
GTGAGCTTATACCTGATGAAATCCT
LOC_Os02g19850
Os.50532.1.S1_at--822--3031Chr02:11665288..11665312 (25 bp)
AATCCTCAATGACTTTATGGTGTGT
LOC_Os02g19850
Os.50532.1.S1_at--646--7071Chr02:11665171..11665195 (25 bp)
GTAATCATAATCAGCACCTCACTGG
LOC_Os02g19850
Os.50532.1.S1_at--741--1951NONE
ACTGGAACTGGCATTTGCACGCGCA
NONE
Os.50532.1.S1_at--511--1831Chr02:11663752..11663776 (25 bp)
ACGCGCATCTGCATACGAAGGTGAA
LOC_Os02g19850
Os.50532.1.S1_at--561--5251Chr02:11663622..11663646 (25 bp)
GAATCTCCGTTATTTTCTTTCTATG
LOC_Os02g19850
Os.50532.1.S1_at--99--4451Chr02:11663465..11663489 (25 bp)
GCCATTGTTGGATTCATGCGTTCTG
LOC_Os02g19850
Os.50532.1.S1_at--576--611Chr02:11663450..11663474 (25 bp)
ATGCGTTCTGAATGTGCAGTCCGAA
LOC_Os02g19850
Target Sequence 
AAGTTGGCACTGCTCTTACCAGTTACAAAAGCATCAGTTGAAAAAATATTTTCAGAAGTGAATGCTATCCATACCGATTT
TTGTGAGCTTATACCTGATGAAATCCTCAATGACTTTATGGTGTGTTATATTGAGAGAGAGATATTTAAAGAACTTGATA
ATGGACCAATTTTGGAACGTTTTCAAACCATGAAAATCTCAGAGAATGCAATTGTGCTGTAATCATAATCAGCACCTCAC
TGGAACTGGCATTTGCACGCGCATCTGCATACGAAGGTGAAAGCGAGTGAACATAATAGTTCATCTTCAATGCTGAGCAA
GGATCATTTTGCAGAGCAGAACTGCCTGTTGGTTGCGAAAAGAAAAAGGGAAATGACTGCTTGGAAGAATCTCCGTTATT
TTCTTTCTATGAGGCACTAAAGTGTTTATCTGATGTGAACTATTATTTTTAATAAATGGGAAATTTCATTTTCTCATTAG
GAAATGTTTAAAGTGTTTAGATGCCGATCTTAGCAAAATATAATCAGGTTATGTTTCATACATGCCATTGTTGGATTCAT
GCGTTCTGAATGTGCAGTCCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50532.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis