Browse Element(s) Details


Os.50899.1.S1_at

Description gb:AK059339.1
DB_XREF= gi:32969357
TID=Os.50899.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50899 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-026-B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-026-B03, full insert sequence.
FL= gb:AK059339.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1986011/11Pre-mRNA splicing factor ATP-dependent RNA helicase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g19850Os.50532.1.S1_at10/112+11663432..11668032transposase, putative, expressed
LOC_Os02g19850Os.20722.2.S1_at1/112+11663432..11668032transposase, putative, expressed
LOC_Os02g19860Os.50899.1.S1_at11/112+11668355..11673576Pre-mRNA splicing factor ATP-dependent RNA helicase, putative, expressed
LOC_Os02g19870NANA2+11674414..11684362retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g19880OsAffx.12123.1.S1_at11/112+11693449..11699182Cell differentiation protein rcd1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003723molecular_functionRNA binding
GO:0003724molecular_functionRNA helicase activity
GO:0004004molecular_functionATP-dependent RNA helicase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50899.1.S1_at--1075--5931Chr02:11673073..11673097 (25 bp)
GAGCAGCGCATTGTTCCAGCGGCAG
LOC_Os02g19860
Os.50899.1.S1_at--970--7691Chr02:11673105..11673129 (25 bp)
GGGTCATCTACCACGAACTTGTAAT
LOC_Os02g19860
Os.50899.1.S1_at--114--11Chr02:11673151..11673175 (25 bp)
GGAGGTTACCGTGATCGACCCGAAG
LOC_Os02g19860
Os.50899.1.S1_at--834--11Chr02:11673164..11673188 (25 bp)
ATCGACCCGAAGTGGCTTACTGAGC
LOC_Os02g19860
Os.50899.1.S1_at--143--5891Chr02:11673185..11673209 (25 bp)
GAGCTAGCCCCGAGATTCTACAAGT
LOC_Os02g19860
Os.50899.1.S1_at--58--1171Chr02:11673207..11673231 (25 bp)
AGTCAGCAGACCCAACCAAGATGAG
LOC_Os02g19860
Os.50899.1.S1_at--72--5991Chr02:11673248..11673272 (25 bp)
GAGAGGATTGAACCCCTGTACGACA
LOC_Os02g19860
Os.50899.1.S1_at--351--6991Chr02:11673265..11673289 (25 bp)
GTACGACAGGTACCATGAGCCCAAC
LOC_Os02g19860
Os.50899.1.S1_at--978--8871Chr02:11673317..11673341 (25 bp)
TGATGGCTCTCACCTGTACAATGTT
LOC_Os02g19860
Os.50899.1.S1_at--907--9131Chr02:11673352..11673376 (25 bp)
TGCGGCGCTGGTTCGATCAAATTCC
LOC_Os02g19860
Os.50899.1.S1_at--1110--7151Chr02:11673421..11673445 (25 bp)
GTCTCAGCTGTGTTTCTTACATGAC
LOC_Os02g19860
Target Sequence 
GAGCAGCGCATTGTTCCAGCGGCAGCCAGACTGGGTCATCTACCACGAACTTGTAATGACGACGAAGGAGTACATGCGGG
AGGTTACCGTGATCGACCCGAAGTGGCTTACTGAGCTAGCCCCGAGATTCTACAAGTCAGCAGACCCAACCAAGATGAGC
AAGAGGAAGAGGCAGGAGAGGATTGAACCCCTGTACGACAGGTACCATGAGCCCAACTCCTGGCGTCTCAGCAAGCGCCG
AGCTTGATGGCTCTCACCTGTACAATGTTCTGCATGTTCTGCGGCGCTGGTTCGATCAAATTCCAAACTGGAAATTTTGG
TGTAGCTGTAAATATTAATGTGACTGTTGTCTCAGCTGTGTTTCTTACATGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50899.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis