Browse Element(s) Details


Os.20730.1.S1_at

Description gb:AK067607.1
DB_XREF= gi:32977625
TID=Os.20730.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.20730 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013112L10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013112L10, full insert sequence.
FL= gb:AK058746.1 gb:AK067607.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3413011/11C2 domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g34100Os.14721.1.S1_at11/119+20121867..20126934Hydroxyacylglutathione hydrolase 2, mitochondrial precursor, putative, expressed
LOC_Os09g34110Os.47933.1.S1_at11/119+20127720..20133877expressed protein
LOC_Os09g34120OsAffx.30134.1.S1_at11/119+20145330..20145839expressed protein
LOC_Os09g34130Os.20730.1.S1_at11/119+20146717..20153743C2 domain-containing protein, putative, expressed
LOC_Os09g34140Os.8469.1.S1_at11/119+20155974..20157770expressed protein
LOC_Os09g34150Os.49413.1.A1_x_at11/119+20157225..20161527NB-ARC domain containing protein, expressed
LOC_Os09g34160OsAffx.30135.1.S1_at11/119+20162189..20167295NB-ARC domain containing protein, expressed
LOC_Os09g34170NANA9+20171841..20172152hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20730.1.S1_at--260--2511Chr09:20148339..20148363 (25 bp)
AACATATGGTTCTTTCAGCTGACAA
LOC_Os09g34130
Os.20730.1.S1_at--1139--4291Chr09:20147987..20148156 (25 bp)
CCTTCTTTGAGGTACACTGTAGATG
LOC_Os09g34130
Os.20730.1.S1_at--1119--7171Chr09:20147962..20147986 (25 bp)
GTCTGTGAAGACTACCAGTTCTGAC
LOC_Os09g34130
Os.20730.1.S1_at--233--1731Chr09:20147949..20147973 (25 bp)
ACCAGTTCTGACTCATGCAGTCTTA
LOC_Os09g34130
Os.20730.1.S1_at--1117--1151Chr09:20147935..20147955 (21 bp)
AGTCTTAACATTAGTGCTGGTGCAC
LOC_Os09g34130
Os.20730.1.S1_at--21--2211Chr09:20146961..20146985 (25 bp)
ACAACGGCGCTGTGACTGAGCAAGA
LOC_Os09g34130
Os.20730.1.S1_at--564--791Chr09:20146934..20146958 (25 bp)
ATGTGGCGCCGGATAATACACCAAA
LOC_Os09g34130
Os.20730.1.S1_at--408--10571Chr09:20146896..20146920 (25 bp)
TTCTCTAAGTTATGTCTTCTCCTGT
LOC_Os09g34130
Os.20730.1.S1_at--183--7151Chr09:20146883..20146907 (25 bp)
GTCTTCTCCTGTAGGATGACATCTA
LOC_Os09g34130
Os.20730.1.S1_at--19--8931Chr09:20146867..20146891 (25 bp)
TGACATCTACCACCCGTTGATAGTA
LOC_Os09g34130
Os.20730.1.S1_at--1100--7691Chr09:20146762..20146786 (25 bp)
GGGTGCTTACAAGATCTAACAGTGT
LOC_Os09g34130
Target Sequence 
AACATATGGTTCTTTCAGCTGACAAAACAGATCTGGTATTTGAAACTGTACAGCNAAGTACATGATGTTCCATTTGGTTC
CTTCTTTGAGGTACACTGTAGATGGTCTGTGAAGACTACCAGTTCTGACTCATGCAGTCTTAACATTAGTGCTGGTGCAC
ATTTCAAGAAATGGTGCATAATGCAGTCGAAGATAAAGAGTGGTGCTGTGGACGAGTACAAGAAGGAAGTCCAGGAGATG
TTGGAATTTGCAGAGTCGTATATGCGCAAAGTTAGAACTTCTAACCAAGACAATGGTANNNCACCTACTGAGCAAGACAA
CGGCGCTGTGACTGAGCAAGAAAATGTGGCGCCGGATAATACACCAAATGATGAATAATTTTTCTCTAAGTTATGTCTTC
TCCTGTAGGATGACATCTACCACCCGTTGATAGTAGTTTGTTGAAGTGTTATAGCAGAAGAACAGGTGGACCTGTAATTA
TAATCCACATGTAATAGGGTTTAGCCGGAAAAAGGGGGTGCTTACAAGATCTAACAGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20730.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis