Browse Element(s) Details


Os.20803.1.S1_a_at

Description gb:AK072744.1
DB_XREF= gi:32982767
TID=Os.20803.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.20803 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0519D04.26 (P0519D04.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023139D20, full insert sequence.
FL= gb:AK099957.1 gb:AK072744.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4941011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49390OsAffx.11529.1.S1_at11/111+28730450..28731541IPP transferase family protein, expressed
LOC_Os01g49400OsAffx.9280.1.S1_at11/111+28733226..28733741hypothetical protein
LOC_Os01g49410Os.20803.1.S1_a_at11/111+28744177..28745448expressed protein
LOC_Os01g49420Os.46500.2.S1_at8/111+28749870..28752013transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g49420Os.46500.1.S1_at5/111+28749870..28752013transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g49430OsAffx.23726.1.S1_x_at11/111+28752662..28754409Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os01g49430OsAffx.23726.2.S1_at11/111+28752662..28754409Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os01g49440Os.28686.1.S1_at11/111+28758782..28760252expressed protein
LOC_Os01g49450NANA1+28768407..28769051hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20803.1.S1_a_at--87--8451Chr01:28744798..28744822 (25 bp)
GGCCAGGACTTCAAGGCGATCCGCG
LOC_Os01g49410
Os.20803.1.S1_a_at--1088--2031Chr01:28744791..28744815 (25 bp)
ACTTCAAGGCGATCCGCGGGACTCG
LOC_Os01g49410
Os.20803.1.S1_a_at--413--9011Chr01:28744637..28744755 (25 bp)
TGCAACGCCAGCTCGACTTGCTGTA
LOC_Os01g49410
Os.20803.1.S1_a_at--984--1571Chr01:28744628..28744746 (25 bp)
AGCTCGACTTGCTGTACCCTGGATT
LOC_Os01g49410
Os.20803.1.S1_a_at--351--9371Chr01:28744625..28744743 (25 bp)
TCGACTTGCTGTACCCTGGATTGTG
LOC_Os01g49410
Os.20803.1.S1_a_at--292--10711Chr01:28744620..28744644 (25 bp)
TTGCTGTACCCTGGATTGTGCCTAG
LOC_Os01g49410
Os.20803.1.S1_a_at--445--8751Chr01:28744616..28744640 (25 bp)
TGTACCCTGGATTGTGCCTAGCGGA
LOC_Os01g49410
Os.20803.1.S1_a_at--295--4271Chr01:28744611..28744635 (25 bp)
CCTGGATTGTGCCTAGCGGACCTGA
LOC_Os01g49410
Os.20803.1.S1_a_at--721--7911Chr01:28744608..28744632 (25 bp)
GGATTGTGCCTAGCGGACCTGACGC
LOC_Os01g49410
Os.20803.1.S1_a_at--534--5831Chr01:28744593..28744617 (25 bp)
GACCTGACGCCGGAGACATACAAGA
LOC_Os01g49410
Os.20803.1.S1_a_at--204--5811Chr01:28744588..28744612 (25 bp)
GACGCCGGAGACATACAAGATTGAA
LOC_Os01g49410
Target Sequence 
GGCCAGGACTTCAAGGCGATCCGCGGGACTCGCCCCCCGCGCCGGCCCAAGAAGCGCCCCCGCACCGTGCAACGCCAGCT
CGACTTGCTGTACCCTGGATTGTGCCTAGCGGACCTGACGCCGGAGACATACAAGATTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20803.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis