Browse Element(s) Details


Os.20863.1.S1_at

Description gb:AK065438.1
DB_XREF= gi:32975456
TID=Os.20863.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20863 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0005H10.22 (P0005H10.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013025A05, full insert sequence.
FL= gb:AK065438.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6297011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62950Os.34462.1.S1_at11/111+36794768..36797290Ras-related protein Rab11C, putative, expressed
LOC_Os01g62960OsAffx.27770.1.S1_x_at4/111+36804898..36805519hypothetical protein
LOC_Os01g62970Os.20863.1.S1_at11/111+36807359..36810839expressed protein
LOC_Os01g62970Os.20863.2.S1_x_at8/111+36807359..36810839expressed protein
LOC_Os01g62980Os.51480.1.S1_x_at11/111+36810869..36811667protease inhibitor/seed storage/lipid transfer protein, putative, expressed
LOC_Os01g62980Os.51480.1.S1_at11/111+36810869..36811667protease inhibitor/seed storage/lipid transfer protein, putative, expressed
LOC_Os01g62990OsAffx.23897.1.S1_at11/111+36812434..36816566pollen-specific kinase partner protein, putative, expressed
LOC_Os01g63000Os.28824.1.S1_at3/111+36822985..36823191expressed protein
LOC_Os01g63010Os.16018.1.S1_at11/111+36823635..36825014ENOD18 protein, putative, expressed
LOC_Os01g63020OsAffx.23898.1.S1_at11/111+36826948..36830514hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20863.1.S1_at--60--9911Chr01:36809351..36809375 (25 bp)
TACTAAGCGAACTTGGTGGCCTCTC
LOC_Os01g62970
Os.20863.1.S1_at--217--7551Chr01:36809366..36809390 (25 bp)
GTGGCCTCTCCCTTGGTGGAAAAGG
LOC_Os01g62970
Os.20863.1.S1_at--114--10531Chr01:36810458..36810482 (25 bp)
TTCACTGTTGCTATGCTGGCCGTAT
LOC_Os01g62970
Os.20863.1.S1_at--957--8411Chr01:36810475..36810499 (25 bp)
GGCCGTATCAGTTACCTAAATCATA
LOC_Os01g62970
Os.20863.1.S1_at--345--7371Chr01:36810505..36810529 (25 bp)
GTGACATCGTCCATCAGTGGTGGCA
LOC_Os01g62970
Os.20863.1.S1_at--1093--211Chr01:36810532..36810556 (25 bp)
ATTTGGATCATCACACCTGGGCAGA
LOC_Os01g62970
Os.20863.1.S1_at--1111--7031Chr01:36810629..36810653 (25 bp)
GTAAGTTTTAGGTCGCAGGTTGCAT
LOC_Os01g62970
Os.20863.1.S1_at--138--331Chr01:36810652..36810676 (25 bp)
ATAAATGGTCCCTATCCATTCTGCC
LOC_Os01g62970
Os.20863.1.S1_at--988--8591Chr01:36810708..36810732 (25 bp)
TGGTCTGGCTCTCTTAGATCGAAGT
LOC_Os01g62970
Os.20863.1.S1_at--1015--6871Chr01:36810731..36810755 (25 bp)
GTATATGTTCCTTGTACTCTCGGAT
LOC_Os01g62970
Os.20863.1.S1_at--1024--7511Chr01:36810786..36810810 (25 bp)
GTGGAGATCACTTGCATTGTAAACA
LOC_Os01g62970
Target Sequence 
TACTAAGCGAACTTGGTGGCCTCTCCCTTGGTGGAAAAGGGAATGGAATGGGAGGGGNTTGGNAGCTGGTTTTGCTTCAC
TGTTGCTATGCTGGCCGTATCAGTTACCTAAATCATACTAGTGTGACATCGTCCATCAGTGGTGGCAGTATTTGGATCAT
CACACCTGGGCAGATGTAGTGTGTCTTTACCNNTTTCATTTCGTAGCTTGTGCTTTAGATGTGAAATGAATCGAACTTAC
AAGCACAGTAAGTTTTAGGTCGCAGGTTGCATAAATGGTCCCTATCCATTCTGCCNAATCTGGTCAGTAACCNGATTGGA
TCANTTTGGTCTGGCTCTCTTAGATCGAAGTATATGTTCCTTGTACTCTCGGATNTTCGCTCCGGAGCCAAGAAGGCTGG
AGAAGTGGAGATCACTTGCATTGTAAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20863.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis