Browse Element(s) Details


Os.21030.1.S1_at

Description gb:AK073567.1
DB_XREF= gi:32983590
TID=Os.21030.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.21030 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0096G08.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033041C15, full insert sequence.
FL= gb:AK073567.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3803011/11Per1-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37970OsAffx.24701.1.S1_at3/1110+20010619..20012297hypothetical protein
LOC_Os10g37970OsAffx.13010.1.S1_x_at2/1110+20010619..20012297hypothetical protein
LOC_Os10g37980Os.17540.1.S1_at11/1110+20015431..20017319prephenate dehydratase family protein, expressed
LOC_Os10g37990OsAffx.20185.1.S1_at10/1110+20022516..20025009hypothetical protein
LOC_Os10g38000OsAffx.30708.1.S1_x_at11/1110+20025393..20025974AP2 domain containing protein
LOC_Os10g38020Os.23271.2.A1_x_at11/1110+20031264..20035426expressed protein
LOC_Os10g38020Os.23271.1.S1_at1/1110+20031264..20035426expressed protein
LOC_Os10g38030Os.21030.1.S1_at11/1110+20035645..20038586Per1-like family protein, expressed
LOC_Os10g38040Os.51639.1.S1_x_at11/1110+20044569..20045771LysM domain containing protein, expressed
LOC_Os10g38040Os.11882.1.S1_at11/1110+20044569..20045771LysM domain containing protein, expressed
LOC_Os10g38060Os.9389.2.S2_at11/1110+20047348..20056413Phospholipase D beta 1, putative, expressed
LOC_Os10g38060Os.9389.2.S1_s_at11/1110+20047348..20056413Phospholipase D beta 1, putative, expressed
LOC_Os10g38060OsAffx.30709.1.S1_x_at11/1110+20047348..20056413Phospholipase D beta 1, putative, expressed
LOC_Os10g38060Os.9389.2.S2_a_at11/1110+20047348..20056413Phospholipase D beta 1, putative, expressed
LOC_Os10g38050Os.9389.1.A1_a_at11/1110+20047512..20049888HOTHEAD protein precursor, putative, expressed
LOC_Os10g38050OsAffx.12714.1.S1_x_at2/1110+20047512..20049888HOTHEAD protein precursor, putative, expressed
LOC_Os10g38070OsAffx.7960.1.S1_at11/1110+20058201..20059181expressed protein
LOC_Os10g38080Os.6363.1.S1_at11/1110+20059961..20062501Subtilisin N-terminal Region family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21030.1.S1_at--620--9651Chr10:20036196..20036220 (25 bp)
TCAGTTCCTCCTATGGGCAGTATGG
LOC_Os10g38030
Os.21030.1.S1_at--504--8251Chr10:20036181..20036205 (25 bp)
GGCAGTATGGGCTGTCATGACAAAA
LOC_Os10g38030
Os.21030.1.S1_at--1091--8151Chr10:20036097..20036121 (25 bp)
GGAAACCTATGACATACCACCACGT
LOC_Os10g38030
Os.21030.1.S1_at--1062--8411Chr10:20036057..20036081 (25 bp)
GGCCGTGTATTTTGTGTTGCTATTT
LOC_Os10g38030
Os.21030.1.S1_at--424--10731Chr10:20036041..20036065 (25 bp)
TTGCTATTTCTATTCCCCTCACATA
LOC_Os10g38030
Os.21030.1.S1_at--792--8191Chr10:20035995..20036019 (25 bp)
GGAAGACGCTGAGATGCGCACTTCA
LOC_Os10g38030
Os.21030.1.S1_at--96--4451Chr10:20035913..20035937 (25 bp)
GCCTATGTGAAATCTTATGCTCGAG
LOC_Os10g38030
Os.21030.1.S1_at--43--4811Chr10:20035895..20035919 (25 bp)
GCTCGAGATTCAGTCTTACCTTGTA
LOC_Os10g38030
Os.21030.1.S1_at--379--6391Chr10:20035863..20035887 (25 bp)
GATCGTTCATGTTCTTTCTAGGCAG
LOC_Os10g38030
Os.21030.1.S1_at--753--3671Chr10:20035812..20035836 (25 bp)
CTTTTTGCCTCAGCTCAGAGGTTTA
LOC_Os10g38030
Os.21030.1.S1_at--90--8751Chr10:20035728..20035752 (25 bp)
TGTAACACGGTATGCTTGTAGCTGT
LOC_Os10g38030
Target Sequence 
TCAGTTCCTCCTATGGGCAGTATGGGCTGTCATGACAAAACATCCTTCATGTTTTAAGATCTTGTTTGTCATTATTGGAA
ACGTATTCTCAATAGTCTTGGAAACCTATGACATACCACCACGTTGGGGATATGTTGATGGCCGTGTATTTTGTGTTGCT
ATTTCTATTCCCCTCACATATCTCTGGTGGAAATTTGCCAAGGAAGACGCTGAGATGCGCACTTCANCAATCATCAAGAA
AACAAGGTAGTGTTCAGCACAAGTGAATAGCNCAAGGATTTGAGCCTATGTGAAATCTTATGCTCGAGATTCAGTCTTAC
CTTGTAAAAATTTGATCGTTCATGTTCTTTCTAGGCAGCTTGTGAATTATGTTTTTTTCCATCCCTTTTTGCCTCAGCTC
AGAGGTTTAGGGTTAATGCTTAGGGTGTGACTAGTCACTTTATATTCATTTTCTTGNAATCCCGACAGTGTAACACGGTA
TGCTTGTAGCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21030.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis