Browse Element(s) Details


Os.21066.1.S1_at

Description gb:AK100394.1
DB_XREF= gi:32985603
TID=Os.21066.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.21066 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative receptor-like protein kinase (OSJNBb0094O03.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023086E17, full insert sequence.
FL= gb:AK058587.1 gb:AK100394.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5625010/11wound and phytochrome signaling involved receptor like kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56190Os.12802.1.S1_at11/113+31956589..31958474Cytochrome c oxidase subunit VIa family protein, expressed
LOC_Os03g56200Os.29068.1.S1_at11/113+31958515..31960126expressed protein
LOC_Os03g56220Os.26469.1.S1_at11/113+31967085..31968819expressed protein
LOC_Os03g56234Os.14589.1.S1_at10/113+31974263..31982288ribosomal protein S14p/S29e containing protein, expressed
LOC_Os03g56234Os.52138.1.S1_at4/113+31974263..31982288ribosomal protein S14p/S29e containing protein, expressed
LOC_Os03g56250Os.21066.1.S1_at10/113+31982905..31987314wound and phytochrome signaling involved receptor like kinase, putative, expressed
LOC_Os03g56260Os.25316.1.S1_at11/113+32003192..32010045Kinesin motor domain containing protein, expressed
LOC_Os03g56260Os.25316.2.S1_x_at10/113+32003192..32010045Kinesin motor domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21066.1.S1_at--587--8471Chr03:31983422..31983446 (25 bp)
TGGCTCGGTACATCCTGAAAGCATT
LOC_Os03g56250
Os.21066.1.S1_at--735--2711Chr03:31983404..31983428 (25 bp)
AAGCATTGGAGAACCCGCTGCGGGT
LOC_Os03g56250
Os.21066.1.S1_at--821--1171Chr03:31983342..31983366 (25 bp)
AGTACTTCATCTCGAAGCTCTTGGC
LOC_Os03g56250
Os.21066.1.S1_at--159--1591Chr03:31983327..31983351 (25 bp)
AGCTCTTGGCATTTTGCTTTTCATG
LOC_Os03g56250
Os.21066.1.S1_at--837--1571Chr03:31983288..31983312 (25 bp)
AGCTCGGAGCTCAGGCCAACATTGG
LOC_Os03g56250
Os.21066.1.S1_at--1083--8011Chr03:31983202..31983226 (25 bp)
GGAGGATTCATTCTCCTTCAAGAGG
LOC_Os03g56250
Os.21066.1.S1_at--722--1211Chr03:31983167..31983191 (25 bp)
AGATTCTCCCTGACCCGGTAGAGTT
LOC_Os03g56250
Os.21066.1.S1_at--913--6891Chr03:31983071..31983095 (25 bp)
GTATAATTCATCCTCTGATGCGCAT
LOC_Os03g56250
Os.21066.1.S1_at--633--452Chr03:31983048..31983072 (25 bp)
ATCTCCTGATGCCTCTAGGTGAAAA
LOC_Os03g56250
Os.21066.1.S1_at--33--3011Chr03:31982909..31982933 (25 bp)
AATGCAAGCGGCCAGAAATTTTCGT
LOC_Os03g56250
Os.21066.1.S1_at--898--2631Chr03:31982880..31982904 (25 bp)
AACCATTTTGTCATTCTGGACTCTG
NONE
Target Sequence 
TGGCTCGGTACATCCTGAAAGCATTGGAGAACCCGCTGCGGGTGGTGAGGGAGGAATTACAGTCGAATTCATCACTCACG
AGTACTTCATCTCGAAGCTCTTGGCATTTTGCTTTTCATGGGGACTCNNGCAGGAGCTCGGAGCTCAGGCCAACATTGGG
GCAGTCAGCCAGGAAGCAGTCAGTGAAGTCACAAGGAAGTGACGAGGATGAGGACGAGGAGGAGGATTCATTCTCCTTCA
AGAGGGCTTCAAGGGAGATTCTCCCTGACCCGGTAGAGTTGGAAAAGGATGCAGTTNTGTAGAATTCACCACAGATTAGC
AATACATGCTACTGAGATTTCATCTCNGTGTGTATAATTCATCCTCTGATGCGCATCTCCTGATGCCTCTAGGTGAAAAA
ACTGTGCATATAGGAGTTAGACTTGTTTCTCTTTTTCCTTTTCATTTCAGTGTTGTGTAATCTGTAACTGAGATTTTGAG
AATAAGTGGAGCACAAGGGTGCGCGGTGCTTGAAATGCAAGCGGCCAGAAATTTTCGTAGACAACCATTTTGTCATTCTG
GACTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21066.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis