Browse Element(s) Details


Os.21180.2.S1_x_at

Description gb:NM_196913.1
DB_XREF= gi:37535185
TID=Os.21180.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.21180 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0071K18.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0071K18.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3278011/11RING zinc finger ankyrin protein, putative
LOC_Os01g391207/11RING zinc finger ankyrin protein, putative
LOC_Os05g021306/11ankyrin repeat family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32740Os.46668.1.S1_at11/1110+16811397..16816430von Willebrand factor type A domain containing protein, expressed
LOC_Os10g32750OsAffx.18492.1.S1_at11/1110+16823554..16825374von Willebrand factor type A domain containing protein
LOC_Os10g32750OsAffx.31678.3.S1_x_at1/1110+16823554..16825374von Willebrand factor type A domain containing protein
LOC_Os10g32760OsAffx.28308.2.S1_x_at11/1110+16826112..16828353von Willebrand factor type A domain containing protein, expressed
LOC_Os10g32770Os.46667.1.S1_x_at11/1110+16828724..16833806WD-repeat protein 26, putative, expressed
LOC_Os10g32770Os.24696.1.A1_s_at10/1110+16828724..16833806WD-repeat protein 26, putative, expressed
LOC_Os10g32780Os.21180.2.S1_x_at11/1110+16837350..16837759RING zinc finger ankyrin protein, putative
LOC_Os10g32780OsAffx.23573.1.S1_s_at11/1110+16837350..16837759RING zinc finger ankyrin protein, putative
LOC_Os10g32790OsAffx.30645.1.S1_at10/1110+16839866..16841873hypothetical protein
LOC_Os10g32800OsAffx.18494.1.S1_at11/1110+16846326..16849108hypothetical protein
LOC_Os10g32810Os.28098.1.S1_at11/1110+16851369..16854068Glycosyl hydrolase family 14 protein, expressed
LOC_Os10g32820Os.2247.1.S1_at11/1110+16854922..1685645460S ribosomal protein L21, putative, expressed
LOC_Os10g32830Os.23241.2.S1_x_at11/1110+16857216..16860503kinase, pfkB family protein
LOC_Os10g32830Os.23241.1.S1_x_at7/1110+16857216..16860503kinase, pfkB family protein
LOC_Os10g32830Os.23241.1.S1_at5/1110+16857216..16860503kinase, pfkB family protein
LOC_Os10g32840NANA10+16861914..16862491hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21180.2.S1_x_at--851--10733Chr10:16837387..16837411 (25 bp)
TTGAACCAGAAGCTAAGGCTCTCCT
LOC_Os10g32780
Os.21180.2.S1_x_at--135--2714Chr10:16837396..16837420 (25 bp)
AAGCTAAGGCTCTCCTGGAAGCAGC
LOC_Os10g32780
Os.21180.2.S1_x_at--428--5394Chr10:16837413..16837437 (25 bp)
GAAGCAGCTCTGATGGAAGCCAACA
LOC_Os10g32780
Os.21180.2.S1_x_at--1104--3833Chr10:16837458..16837482 (25 bp)
CTGAATGGCACAAAGTACTCCCTGC
LOC_Os10g32780
Os.21180.2.S1_x_at--183--552Chr10:16837484..16837508 (25 bp)
ATCCCCTTTGCCTGGTGATGACAGT
LOC_Os10g32780
Os.21180.2.S1_x_at--1023--8593Chr10:16837496..16837520 (25 bp)
TGGTGATGACAGTGCCGATGACGAT
LOC_Os10g32780
Os.21180.2.S1_x_at--1103--7273Chr10:16837507..16837531 (25 bp)
GTGCCGATGACGATGCATGCTCAGA
LOC_Os10g32780
Os.21180.2.S1_x_at--1111--8071Chr10:16837642..16837666 (25 bp)
GGAGCTCTGCTGCATCTGCTTCGAC
LOC_Os10g32780
Os.21180.2.S1_x_at--413--10611Chr10:16837661..16837685 (25 bp)
TTCGACCAAGCTTGCACCATTGAGG
LOC_Os10g32780
Os.21180.2.S1_x_at--657--9011Chr10:16837673..16837697 (25 bp)
TGCACCATTGAGGTCGCTGCCGTCA
LOC_Os10g32780
Os.21180.2.S1_x_at--40--10692Chr10:16837704..16837728 (25 bp)
TTGCCAGCGTCGTATCTGCCGCCGT
LOC_Os10g32780
Target Sequence 
TTGAACCAGAAGCTAAGGCTCTCCTGGAAGCAGCTCTGATGGAAGCCAACAGGGAGAGGGAGAAGAAAATCCTGAATGGC
ACAAAGTACTCCCTGCCATCCCCTTTGCCTGGTGATGACAGTGCCGATGACGATGCATGCTCAGAGGTGAGCGACATGGA
GCTCTGCTGCATCTGCTTCGACCAAGCTTGCACCATTGAGGTCGCTGCCGTCACCGCCATTGCCAGCGTCGTATCTGCCG
CCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21180.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis