Browse Element(s) Details


Os.21230.1.S1_at

Description gb:AK069406.1
DB_XREF= gi:32979430
TID=Os.21230.1
CNT=27
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.21230 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023014B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023014B04, full insert sequence.
FL= gb:AK069406.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0719011/11CBS domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07150Os.20118.1.A1_s_at11/1112+3502115..3508255Amidase family protein, expressed
LOC_Os12g07160Os.24613.1.S1_at11/1112+3513880..3520715Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os12g07170OsAffx.24099.1.S1_x_at1/1112+3522302..3524423transposon protein, putative, Pong sub-class
LOC_Os12g07180Os.26430.1.A1_at9/1112+3524545..3526563expressed protein
LOC_Os12g07190Os.21230.1.S1_at11/1112+3530358..3535425CBS domain-containing protein, putative, expressed
LOC_Os12g07200NANA12+3537613..3538138hypothetical protein
LOC_Os12g07210Os.5725.1.S1_at1/1112+3541704..3543482Fructose-bisphosphate aldolase class-I family protein
LOC_Os12g07220Os.9938.1.S1_at11/1112+3548137..3551609expressed protein
LOC_Os12g07230OsAffx.31629.1.S1_at11/1112+3552653..3557399Calcium-dependent protein kinase, isoform AK1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21230.1.S1_at--84--3271Chr12:3531041..3531065 (25 bp)
CAACTGATGCCGATCTTGCTGGTGC
LOC_Os12g07190
Os.21230.1.S1_at--140--9231Chr12:3531011..3531035 (25 bp)
TCCATGCCAAATCGTCCGGTTTGAA
LOC_Os12g07190
Os.21230.1.S1_at--1093--6711Chr12:3530870..3530894 (25 bp)
GTTCTGAAGTTGCATATCGACCTGT
LOC_Os12g07190
Os.21230.1.S1_at--247--10151Chr12:3530856..3530880 (25 bp)
TATCGACCTGTCTGAATCCAGCACA
LOC_Os12g07190
Os.21230.1.S1_at--820--9031Chr12:3530799..3530823 (25 bp)
TGCACGCAGGAGTCGGTTGTCGCCT
LOC_Os12g07190
Os.21230.1.S1_at--100--3871Chr12:3530762..3530786 (25 bp)
CTGATGGCTGGTGTGGTCGCTCTCA
LOC_Os12g07190
Os.21230.1.S1_at--544--9351Chr12:3530746..3530770 (25 bp)
TCGCTCTCAGCGGTGCAGCAGTGAT
LOC_Os12g07190
Os.21230.1.S1_at--420--5911Chr12:3530707..3530731 (25 bp)
GAGCTAAAGTGTGATTTCCCCATGA
LOC_Os12g07190
Os.21230.1.S1_at--923--1291Chr12:3530580..3530604 (25 bp)
AGATGCACTGAAACTCTCTGACGCC
LOC_Os12g07190
Os.21230.1.S1_at--759--4491Chr12:3530558..3530582 (25 bp)
GCCGGGCTGAAGAATCTGCCTATGT
LOC_Os12g07190
Os.21230.1.S1_at--74--10811Chr12:3530527..3530551 (25 bp)
TTGTTTCCTCAATTTGCACGCATAT
LOC_Os12g07190
Target Sequence 
CAACTGATGCCGATCTTGCTGGTGCCGTGCTCCATGCCAAATCGTCCGGTTTGAAGGTTCTGAAGTTGCATATCGACCTG
TCTGAATCCAGCACAGAGGTGACAAAGCCATCACAGCAGCTGGCAGCTGCACGCAGGAGTCGGTTGTCGCCTGTTCGTGT
TGGGCTGATGGCTGGTGTGGTCGCTCTCAGCGGTGCAGCAGTGATGGTTTACCTGAAACGAGCTAAAGTGTGATTTCCCC
ATGAATTACTGGTAATTTTTNCAAACCTGTATTTTTTTCCAGTTCCTGGAGCTAATTATGCATCATGCCAAAGAAATGAC
ACATTGGAGAGCAACCAAAGTTGCATCAGATGCACTGAAACTCTCTGACGCCGGGCTGAAGAATCTGCCTATGTTGGTTT
TTGTTTCCTCAATTTGCACGCATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21230.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis