Browse Element(s) Details


Os.21286.1.S1_at

Description gb:AK102062.1
DB_XREF= gi:32987271
TID=Os.21286.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21286 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative SunNOL1NOP nucleolar protein (OJ1484_G09.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033082D18, full insert sequence.
FL= gb:AK102062.1 gb:AK059023.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2782411/11NOL1/NOP2/sun family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g27790NANA8+16794670..16797680retrotransposon protein, putative, unclassified
LOC_Os08g27800NANA8+16798779..16804382retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27810OsAffx.29386.2.S1_at11/118+16806753..16808943Calcium binding EGF domain containing protein, expressed
LOC_Os08g27810OsAffx.29386.1.S1_x_at11/118+16806753..16808943Calcium binding EGF domain containing protein, expressed
LOC_Os08g27810OsAffx.29386.1.S1_at11/118+16806753..16808943Calcium binding EGF domain containing protein, expressed
LOC_Os08g27824Os.21286.1.S1_at11/118+16813642..16827150NOL1/NOP2/sun family protein, putative, expressed
LOC_Os08g27824Os.21286.2.S1_x_at10/118+16813642..16827150NOL1/NOP2/sun family protein, putative, expressed
LOC_Os08g27824Os.21286.2.S1_at10/118+16813642..16827150NOL1/NOP2/sun family protein, putative, expressed
LOC_Os08g27840Os.6248.1.S1_s_at11/118+16831868..16837720Phosphoenolpyruvate carboxylase 2, putative, expressed
LOC_Os08g27840Os.10454.1.S1_a_at11/118+16831868..16837720Phosphoenolpyruvate carboxylase 2, putative, expressed
LOC_Os08g27840Os.45901.1.S1_x_at2/118+16831868..16837720Phosphoenolpyruvate carboxylase 2, putative, expressed
LOC_Os08g27850Os.7897.1.S1_at11/118+16849431..16852585Endothelial differentiation-related factor 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21286.1.S1_at--236--6171Chr08:16816058..16816082 (25 bp)
GAGGACCTGGTATTGTTGGTTCATT
LOC_Os08g27824
Os.21286.1.S1_at--1053--6611Chr08:16816044..16816068 (25 bp)
GTTGGTTCATTTGAGCGATCAACCA
LOC_Os08g27824
Os.21286.1.S1_at--636--4991Chr08:16814136..16814160 (25 bp)
GCATGAATCACAACTTGTCCAGAGA
LOC_Os08g27824
Os.21286.1.S1_at--607--7271Chr08:16814120..16814144 (25 bp)
GTCCAGAGATTCGATCCATCATCAA
LOC_Os08g27824
Os.21286.1.S1_at--569--7951Chr08:16814091..16814115 (25 bp)
GGATACAATTGGTTTCTTCATTGCA
LOC_Os08g27824
Os.21286.1.S1_at--342--7971Chr08:16814006..16814030 (25 bp)
GGATCCTACACTCTGAAACTTGCTG
LOC_Os08g27824
Os.21286.1.S1_at--49--5551Chr08:16813992..16814016 (25 bp)
GAAACTTGCTGTTCCTGACTTCAAA
LOC_Os08g27824
Os.21286.1.S1_at--1151--3431Chr08:16813944..16813968 (25 bp)
CAGTTAGATCATTTCAGGGCCCCAA
LOC_Os08g27824
Os.21286.1.S1_at--391--1071Chr08:16813929..16813953 (25 bp)
AGGGCCCCAATCATTTTTCAGTATG
LOC_Os08g27824
Os.21286.1.S1_at--956--5591Chr08:16813871..16813895 (25 bp)
GAAATTTTGTGCTCAACTGTCAATA
LOC_Os08g27824
Os.21286.1.S1_at--331--8051Chr08:16813699..16813723 (25 bp)
GGAGTTGTGCTTTGTATGGCTTAGC
LOC_Os08g27824
Target Sequence 
GAGGACCTGGTATTGTTGGTTCATTTGAGCGATCAACCAAGAAATATACTGAGGAGTGGTTGACAAAGCATGAATCACAA
CTTGTCCAGAGATTCGATCCATCATCAACTCTGGATACAATTGGTTTCTTCATTGCANAAGTTTGATGTTGGGCAGAAAG
ACGACTGACGTAAGGGGTTCTCTTGAGCATNCTATTTNGGATCCTACACTCTGAAACTTGCTGTTCCTGACTTCAAATAT
CTCAGCATTAACACTTGCTGCAGTTAGATCATTTCAGGGCCCCAATCATTTTTCAGTATGAATGGGAACCAATATCCCAT
ATCTGGNTTCCCAGAAATTTTGTGCTCAACTGTCAATATTAAATTATTCTTTGTCCAAGGGATTATTGTTTGTTGTAATG
AAATGCCAAGGGTGACTGGTTGAAAGTNGAAACATTTGTAAACCCAAAATNATAGGGACTTGAGATTTTAGATGTTGGGT
GGTGGGGATATNGAGCNTGGAAGAGTGGAGTTGTGCTTTGTATGGCTTAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21286.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis