Browse Element(s) Details


Os.10454.1.S1_a_at

Description gb:AY187619.1
DB_XREF= gi:27948553
GEN=PEPC
TID=Os.10454.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10454 (NCBI UniGene Cluster)
DEF=Oryza sativa (indica cultivar-group) phosphoenolpyruvate carboxylase (PEPC) mRNA, complete cds.
PROD=phosphoenolpyruvate carboxylase
FL= gb:AY187619.1 gb:AK073703.1 gb:AK067572.1 gb:AK061683.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2784011/11Phosphoenolpyruvate carboxylase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g27810OsAffx.29386.2.S1_at11/118+16806753..16808943Calcium binding EGF domain containing protein, expressed
LOC_Os08g27810OsAffx.29386.1.S1_x_at11/118+16806753..16808943Calcium binding EGF domain containing protein, expressed
LOC_Os08g27810OsAffx.29386.1.S1_at11/118+16806753..16808943Calcium binding EGF domain containing protein, expressed
LOC_Os08g27824Os.21286.1.S1_at11/118+16813642..16827150NOL1/NOP2/sun family protein, putative, expressed
LOC_Os08g27824Os.21286.2.S1_x_at10/118+16813642..16827150NOL1/NOP2/sun family protein, putative, expressed
LOC_Os08g27824Os.21286.2.S1_at10/118+16813642..16827150NOL1/NOP2/sun family protein, putative, expressed
LOC_Os08g27840Os.6248.1.S1_s_at11/118+16831868..16837720Phosphoenolpyruvate carboxylase 2, putative, expressed
LOC_Os08g27840Os.10454.1.S1_a_at11/118+16831868..16837720Phosphoenolpyruvate carboxylase 2, putative, expressed
LOC_Os08g27840Os.45901.1.S1_x_at2/118+16831868..16837720Phosphoenolpyruvate carboxylase 2, putative, expressed
LOC_Os08g27850Os.7897.1.S1_at11/118+16849431..16852585Endothelial differentiation-related factor 1, putative, expressed
LOC_Os08g27860Os.11625.1.S1_at11/118+16855631..16858524expressed protein
LOC_Os08g27860OsAffx.5959.1.S1_x_at9/118+16855631..16858524expressed protein
LOC_Os08g27870OsAffx.29387.1.S1_at11/118+16861751..16864039hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006099biological_processtricarboxylic acid cycle
GO:0008964molecular_functionphosphoenolpyruvate carboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10454.1.S1_a_at--980--3811Chr08:16832822..16832846 (25 bp)
CTGCCTTCAAGCACATCCTGGAGAA
LOC_Os08g27840
Os.10454.1.S1_a_at--136--1351Chr08:16832742..16832766 (25 bp)
AGAGTCACGATCGATCTGGTTGAGA
LOC_Os08g27840
Os.10454.1.S1_a_at--1082--8491Chr08:16832695..16832719 (25 bp)
TGGCATCGCCGCATTGTACGACAAG
LOC_Os08g27840
Os.10454.1.S1_a_at--563--8711Chr08:16832665..16832689 (25 bp)
TGTCTCCGAGGAGCTATGGCCTCTG
LOC_Os08g27840
Os.10454.1.S1_a_at--813--2732Chr03:32342245..32342264 (20 bp)
AAGAAACCAAACAGCTTCTCCTTCA
NONE
Os.10454.1.S1_a_at--846--1551Chr08:16832478..16832627 (25 bp)
AGCTTCTCCTTCAGGTTGCTGGACA
LOC_Os08g27840
Os.10454.1.S1_a_at--122--6691Chr08:16832464..16832488 (25 bp)
GTTGCTGGACACAAGGATCTTCTCG
LOC_Os08g27840
Os.10454.1.S1_a_at--260--6431Chr08:16832449..16832473 (25 bp)
GATCTTCTCGAAGGTGATCTCTACC
LOC_Os08g27840
Os.10454.1.S1_a_at--51--6311Chr08:16832360..16832384 (25 bp)
GATGAAGCGAATCCGCGACCCGGAC
LOC_Os08g27840
Os.10454.1.S1_a_at--452--8611Chr08:16832268..16832292 (25 bp)
TGGTGAAGCTGAACCCGACCAGTGA
LOC_Os08g27840
Os.10454.1.S1_a_at--226--8211Chr08:16832188..16832212 (25 bp)
GGAATGCAGAACACCGGCTAAGCGA
LOC_Os08g27840
Target Sequence 
CTGCCTTCAAGCACATCCTGGAGAAGGACATCAGGAACCTCCACATGCTCCAGGAGATGTACAATGAGTGGCCAGTTCTT
CAGAGTCACGATCGATCTGGTTGAGATGGTTTTCGCCAAGGGTGACCCTGGCATCGCCGCATTGTACGACAAGCTCCTCT
GTCTCCGAGGAGCTATGGCCTCTGGGAGAGAAACTGAGGGCCAACTGTGAAGAAACCAAACAGCTTCTCCTTCAGGTTGC
TGGACACAAGGATCTTCTCGAAGGTGATCTCTACCTGAAGCAGCGCCTTCGCCTCCGCAATGCCTACATCACCACCCTGA
ATGTCTGCCAGGCTTACACGATGAAGCGAATCCGCGACCCGGACTACCATGTCACGCTGCGCCCCCACATGTCCAAGGAG
ATCATGGACTGGTCTAAGCCGGCTGCGGAGCTGGTGAAGCTGAACCCGACCAGTGAGTATGCGCCGGGGCTGGAGGACAC
CCTCATCCTGACCATGAAGGGAATTGCTGCTGGAATGCAGAACACCGGCTAAGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10454.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis