Browse Element(s) Details


OsAffx.29387.1.S1_at

Description tigr:9636.m02755
TID=OsAffx.29387.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2787011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g27840Os.6248.1.S1_s_at11/118+16831868..16837720Phosphoenolpyruvate carboxylase 2, putative, expressed
LOC_Os08g27840Os.10454.1.S1_a_at11/118+16831868..16837720Phosphoenolpyruvate carboxylase 2, putative, expressed
LOC_Os08g27840Os.45901.1.S1_x_at2/118+16831868..16837720Phosphoenolpyruvate carboxylase 2, putative, expressed
LOC_Os08g27850Os.7897.1.S1_at11/118+16849431..16852585Endothelial differentiation-related factor 1, putative, expressed
LOC_Os08g27860Os.11625.1.S1_at11/118+16855631..16858524expressed protein
LOC_Os08g27860OsAffx.5959.1.S1_x_at9/118+16855631..16858524expressed protein
LOC_Os08g27870OsAffx.29387.1.S1_at11/118+16861751..16864039hypothetical protein
LOC_Os08g27880OsAffx.17197.1.S1_at11/118+16864916..16865233hypothetical protein
LOC_Os08g27890NANA8+16868352..16870074retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27900Os.53142.1.S1_at3/118+16872318..16877980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27900OsAffx.27522.1.S1_x_at2/118+16872318..16877980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27900OsAffx.16187.1.S1_at1/118+16872318..16877980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27900OsAffx.3613.1.S1_x_at1/118+16872318..16877980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27910NANA8+16881750..16883183retrotransposon protein, putative, unclassified
LOC_Os08g27920NANA8+16887733..16889801retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009648biological_processphotoperiodism
GO:0009909biological_processregulation of flower development
GO:0042753biological_processpositive regulation of circadian rhythm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29387.1.S1_at--931--2251Chr08:16863982..16864006 (25 bp)
AAATATCGTGCGTTCCTATGTCATC
LOC_Os08g27870
OsAffx.29387.1.S1_at--983--4632Chr08:16863973..16863997 (25 bp)
GCGTTCCTATGTCATCATCTAGCAT
LOC_Os08g27870
OsAffx.29387.1.S1_at--624--3551Chr08:16863958..16863982 (25 bp)
CATCTAGCATGTATTTGGTGGTCAA
LOC_Os08g27870
OsAffx.29387.1.S1_at--579--7832Chr02:27049139..27049159 (21 bp)
GGTCAATGATTGAAGCGATCGAGAA
NONE
OsAffx.29387.1.S1_at--500--1111Chr08:16862215..16862239 (25 bp)
AGTGAACAATCAATCCGACTGGATC
LOC_Os08g27870
OsAffx.29387.1.S1_at--382--951Chr08:16862049..16862073 (25 bp)
AGGACCCGCCACTTAGCTTAGGTGA
LOC_Os08g27870
OsAffx.29387.1.S1_at--781--4391Chr08:16862042..16862066 (25 bp)
GCCACTTAGCTTAGGTGAGGTGCGA
LOC_Os08g27870
OsAffx.29387.1.S1_at--83--1451Chr08:16862004..16862028 (25 bp)
AGAACCACACGCTGATCCAAGAGAT
LOC_Os08g27870
OsAffx.29387.1.S1_at--957--1271Chr08:16861983..16862007 (25 bp)
AGATCAGCCAAAACCACAAGGCCCG
LOC_Os08g27870
OsAffx.29387.1.S1_at--833--7351Chr08:16861896..16861920 (25 bp)
GTGTCGTTGACCTCTACGCCAACCT
LOC_Os08g27870
OsAffx.29387.1.S1_at--668--4531Chr08:16861783..16861807 (25 bp)
GCCGCCACAGCTGAGGTGAGCAAGC
LOC_Os08g27870
Target Sequence 
AAATATCGTGCGTTCCTATGTCATCATCTAGCATGTATTTGGTGGTCAATGATTGAAGCGATCGAGAAAAGAAGTGAACA
ATCAATCCGACTGGATCTGGGGATGATGGAGGAGGACAGCTTCATCAACAACGATGTTGGGGAGGAGGTGGTGGTTGCGA
ACGGTGGTGACGGCGAAGGGGTCGGGGGGATGGCGAGGAGCGACGACGGCGGCGATGGGGGAGGGGGGAATGTGGTGCAG
GACCCGCCACTTAGCTTAGGTGAGGTGCGAGGGATCCTGGAGCAGAACCACACGCTGATCCAAGAGATCAGCCAAAACCA
CAAGGCCCGCGATGCCGATCGCCTCACCCGCAACGTCGCCCTCATCCGGGATCTCAACACAAACATCGCCCGTGTCGTTG
ACCTCTACGCCAACCTCACCGGCTCCTCTCACTCCCACACCACATCCGACGTTGCCAGCGCCACCAACACCAACGCCACC
AATAGTTCCTCCCCGTCCGCCGCCGCCGCCACAGCTGAGGTGAGCAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29387.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis