Browse Element(s) Details


Os.7897.1.S1_at

Description gb:AK120339.1
DB_XREF= gi:37989962
TID=Os.7897.1
CNT=61
FEA=FLmRNA
TIER=FL+Stack
STK=23
UG=Os.7897 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-041-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013060M10, full insert sequence.
FL= gb:AK120339.1 gb:AK120022.1 gb:AK061882.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2785011/11Endothelial differentiation-related factor 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g27824Os.21286.1.S1_at11/118+16813642..16827150NOL1/NOP2/sun family protein, putative, expressed
LOC_Os08g27824Os.21286.2.S1_x_at10/118+16813642..16827150NOL1/NOP2/sun family protein, putative, expressed
LOC_Os08g27824Os.21286.2.S1_at10/118+16813642..16827150NOL1/NOP2/sun family protein, putative, expressed
LOC_Os08g27840Os.6248.1.S1_s_at11/118+16831868..16837720Phosphoenolpyruvate carboxylase 2, putative, expressed
LOC_Os08g27840Os.10454.1.S1_a_at11/118+16831868..16837720Phosphoenolpyruvate carboxylase 2, putative, expressed
LOC_Os08g27840Os.45901.1.S1_x_at2/118+16831868..16837720Phosphoenolpyruvate carboxylase 2, putative, expressed
LOC_Os08g27850Os.7897.1.S1_at11/118+16849431..16852585Endothelial differentiation-related factor 1, putative, expressed
LOC_Os08g27860Os.11625.1.S1_at11/118+16855631..16858524expressed protein
LOC_Os08g27860OsAffx.5959.1.S1_x_at9/118+16855631..16858524expressed protein
LOC_Os08g27870OsAffx.29387.1.S1_at11/118+16861751..16864039hypothetical protein
LOC_Os08g27880OsAffx.17197.1.S1_at11/118+16864916..16865233hypothetical protein
LOC_Os08g27890NANA8+16868352..16870074retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27900Os.53142.1.S1_at3/118+16872318..16877980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27900OsAffx.27522.1.S1_x_at2/118+16872318..16877980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27900OsAffx.16187.1.S1_at1/118+16872318..16877980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27900OsAffx.3613.1.S1_x_at1/118+16872318..16877980retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006350biological_processtranscription
GO:0009723biological_processresponse to ethylene stimulus
GO:0009873biological_processethylene mediated signaling pathway
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0003713molecular_functiontranscription coactivator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7897.1.S1_at--901--7831Chr08:16852051..16852075 (25 bp)
GGTAAAGCTATTCCGAACCAGCAGA
LOC_Os08g27850
Os.7897.1.S1_at--867--3751Chr08:16852097..16852121 (25 bp)
CTCTTGGAACAAAGCTGCGCGGCAA
LOC_Os08g27850
Os.7897.1.S1_at--32--371Chr08:16852125..16852149 (25 bp)
ATAATGTTCTACTATTAGGCCCTGA
LOC_Os08g27850
Os.7897.1.S1_at--388--10271Chr08:16852139..16852163 (25 bp)
TTAGGCCCTGAAGCATAGTGTTGGA
LOC_Os08g27850
Os.7897.1.S1_at--20--751Chr08:16852179..16852203 (25 bp)
ATGTTTGCGTAACCTATGCTGGGTC
LOC_Os08g27850
Os.7897.1.S1_at--935--611Chr08:16852194..16852218 (25 bp)
ATGCTGGGTCTTTTGATACCATGCA
LOC_Os08g27850
Os.7897.1.S1_at--340--2351Chr08:16852271..16852295 (25 bp)
AAACCTTGTAATGCTGCCGCTCTTT
LOC_Os08g27850
Os.7897.1.S1_at--942--4811Chr08:16852289..16852313 (25 bp)
GCTCTTTGTGTGTCATAGTCCCTAG
LOC_Os08g27850
Os.7897.1.S1_at--341--291Chr08:16852303..16852327 (25 bp)
ATAGTCCCTAGTGTGCAAGAGTTGT
LOC_Os08g27850
Os.7897.1.S1_at--1035--8611Chr08:16852325..16852349 (25 bp)
TGTGCTGGACCTTAAAACTGACTTG
LOC_Os08g27850
Os.7897.1.S1_at--71--2391Chr08:16852339..16852363 (25 bp)
AAACTGACTTGATAACCTGCGTGGT
LOC_Os08g27850
Target Sequence 
GGTAAAGCTATTCCGAACCAGCAGATCATCGGGAAGCTTGAAAGGGCTCTTGGAACAAAGCTGCGCGGCAAGAAATAATG
TTCTACTATTAGGCCCTGAAGCATAGTGTTGGAGCAACCAAAGCCAAAATGTTTGCGTAACCTATGCTGGGTCTTTTGAT
ACCATGCAGGATGTTTCTGTTGGTGCATGAGTGAATACTGAATAACTATTATGTTGTCGCAAACCTTGTAATGCTGCCGC
TCTTTGTGTGTCATAGTCCCTAGTGTGCAAGAGTTGTGCTGGACCTTAAAACTGACTTGATAACCTGCGTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7897.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis